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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCTGTGGAGATCGATGAATACGACCTTGTTGATCCTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTTTGGGACGGTGTGgtatgtgacctgtcttgaatgcacactattggccacactatcatatgaaaagtagtcatcatattggtttttggtgtgtgatgccag

Basic information

species Zea mays
transcript GRMZM2G070126_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070126_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g60040.1 (Oryza sativa), 5'ss of exon 8
CCCCTGTGGAGATCGATGAATACGACCTTGTTGATCCTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTTTGGGACGGTGTGgtatgtgacctgtcttgaatgca---------cactattggccacactatcata-tgaaaagtagtcatcat-------attggtttttggtgtgtgatgccag
||||| ||||||||||||||||||| |||||||||||||| || || ||||| ||||| || ||||||||||||||||| |||||||||||||  |||  |||| ||||         || | |    ||||  || ||| |||||  | ||| || |       |||   ||||| | | |||| ||||
CCCCTATGGAGATCGATGAATACGATCTTGTTGATCCTGTTGATATCTTAACACCACTTGAGAAGTCTGGATTTTGGGATGGTGTGgtatgtg--ctgatttgagtgcagcattgatacattgtccatcacaacattatagtgaaatattgtcctcttttgaatgattctattttgttatctgataccag

upper sequence: GRMZM2G070126_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv10s0116g00490.t01 (Vitis vinifera), 5'ss of exon 8
CCCCTGTGGAGATCGATGAATACGACCTTGTTGATCCTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTTTGGGACGGTGTGgtatgtgacctgtct------------tgaatgcacactattggccac--actatcatatga---aaagtagtcatcatattggtttttggtgtgtgatgccag----------------------------------
| |||  ||| || |||||||| || ||||| |||||||| || || || |||||  |||||||||| ||||||||||| || |||||  |||   | |||            | | |       ||| || ||  | | |  | ||    ||    ||  | || ||| | | |      || |   ||                                  
CTCCTCAGGAAATAGATGAATATGAACTTGTCGATCCTGTTGATATATTGACCCCTTTAGAAAAGTCAGGATTTTGGGATGGAGTGgtcagtgctttctctctctctcatctcttattcagtgacatttgctacttattttgttgtgttttaatactgttgttattttgatctctcaatcatgttattagaggttagttctttaacattttgtttgtcctttag

upper sequence: GRMZM2G070126_T02 (Zea mays), 5'ss of exon 8
lower sequence: PP1S131_18V6.1 (Physcomitrella patens), 5'ss of exon 8
CCCCTGTGGAGATCGATGAATACGACCTTGTTGATCCTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTTTGGGACGGTGTGgtatgtgacctgtcttgaatgcacactattggccacactatcatatgaaaagtagtcatcatattggtttttggtgtgtgatgccag-----------------
   |    || || ||||||||||| || |||||||||||||||||||| || ||| | |  |||||  | || ||||| || |||||| || ||   |  |||  |||   | | |  |  |||  | || |  | ||         |||  ||||   ||   || |  |                  
GTTCATCTGATATAGATGAATACGATCTAGTTGATCCTGTAGACATTTTGACACCATTGGGCAAGTCCAGCTTCTGGGATGGAGTGgtaagt-actcataatgatggcaa--tgtggcacgtactcactta-gtgacgttacttctggattcattttccatgctggaggagattcttcttttattattaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211274055|gb|FL438415.1|FL438415
EST:     CTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTTTGGGACGGTGTG                         AAAGCAACTAAATGGTCAGAGAGAAGGGATGCTGTGGCAGAGCTAACCAAG
genomic: CTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTTTGGGACGGTGTGgtatgtgacc ... gtgatgccagAAAGCAACTAAATGGTCAGAGAGAAGGGATGCTGTGGCAGAGCTAACCAAG