1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAAgtatgagctgtagcctatcacattttaaatttgttctcactttctacaacttaattttttcttgttttcttttaccgaaaatccag
species | Zea mays |
transcript | GRMZM2G070113_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAA TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAGEST: gi|31628085|gb|CD526434.1|CD526434
genomic: GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAAgtatgagctg ... gaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
EST: GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAA TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAGEST: gi|30031872|gb|CB833723.1|CB833723
genomic: GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAAgtatgagctg ... gaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
EST: CAAGGAACATATATGATGGTTGNCTGCCAGCTAGATATTCAATATTCAAA TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAGEST: gi|61118021|gb|DN558982.1|DN558982
genomic: -AAGGAACATATATGATGGTTG-CTGCCAGCTAGATATTCAATATTCAAAgtatgagctg ... gaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
EST: GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAA TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAGEST: gi|31360867|gb|CD445224.1|CD445224
genomic: GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAAgtatgagctg ... gaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
EST: GGAAGGAACATATACGATGGTTGCTGCCAGCTAGATATTCAATATTCAAA TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAGEST: gi|33093651|gb|CF053645.1|CF053645
genomic: GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAAgtatgagctg ... gaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
EST: GCCAGCTAGATATTCAATATTCAAA TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAGEST: gi|71436418|gb|DR817468.1|DR817468
genomic: GCCAGCTAGATATTCAATATTCAAAgtatgagctg ... gaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
EST: GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAA TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAGEST: gi|76011812|gb|DT938982.1|DT938982
genomic: GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAAgtatgagctg ... gaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
EST: GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAA TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAGEST: gi|32915229|gb|CF020041.1|CF020041
genomic: GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAAgtatgagctg ... gaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
EST: GGAAGGAACATATACGATGGTTGCTGCCAGCTAGATATTCAATATTCAAA TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
genomic: GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAAgtatgagctg ... gaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAAgtatgagctgtagcctatcacattttaaatttgttctcactttctacaacttaattttttcttgttttcttttaccgaaaatccag
- AAGGAA
- - - - - - - - - - TGCTGC