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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCAACTCACTGTAATACACTAGCATATAGTAGCTCAAAGGGTACTATTCGGCTTATTGATCTGCGACAGTCAGCACTGTGTGACAACCATGCTAAACTgttagtaaccccccttgaacttcagtaacattattgttgattagaaggcaatgcttagattttatcatttctaatggctacaaacattttaagtttatttattggtcatggtcttatctggtttaactggggcatcttgttcag

Basic information

species Zea mays
transcript GRMZM2G069631_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069631_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g13110.2 (Oryza sativa), 5'ss of exon 8
ATCCAACTCACTGTAATACACTAGCATATAGTAGCTCAAAGGGTACTATTCGGCTTATTGATCTGCGACAGTCAGCACTGTGTGACAACCATGCTAAACTgttagtaaccccccttgaacttca----gtaacatt-attgttgattagaaggcaatgctt----agattttatcatttctaatggctacaaacattttaagtttattta----ttggtcatggtcttatctggtttaactggggcatcttgttcag
| |||||||| ||||||||| |||| ||||||||||| |||||  ||||  |||||||||||||||| || |||||||| |||||||||||||||||  |||||||||||||| ||| |||||     | |||||| ||  ||| |||||||| |||| |       |||  |   || | ||||  |  |   | |||   | |   ||    |||  || | | || |||    |||   | ||||  ||| |||
ACCCAACTCATTGTAATACATTAGCCTATAGTAGCTCGAAGGGCTCTATCAGGCTTATTGATCTGCGGCAATCAGCACTATGTGACAACCATGCTAAGTTgttagtaaccccc-ttgcacttcctaatggaacatttatcattgtttagaaggaaatgttcgatggaattaaaaagttgcaaatgtttgaagttaatttttatatggataaaatttgcacaagctgttctctaaaataaagtgcgcattctgtgcag

upper sequence: GRMZM2G069631_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 8
ATCCAACTCACTGTAATACACTAGCATATAGTAGCTCAAAGGGTACTATTCGGCTTATTGATCTGCGACAGTCAGCACTGTGTGACAACCATGCTAAACTgttagtaaccccccttgaacttcagtaacatt-attgttgattagaa--ggcaatgcttagatttt---atcatttctaatggctacaaacattttaagtttatttattggtcatggtcttatctggtttaactggggcatcttgttcag
| || || || ||||||||| | |||||||| |||||||||||| | ||||| ||| ||||  |||| ||||||||| | |||||    ||||| ||||||| ||  | |        |  | | |    || ||| | | ||| |    |||||| | || ||        |  |  || ||    | | | ||| | |                                                  
ACCCTACACATTGTAATACATTGGCATATAGCAGCTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTgtaagctatcttttgcttatgttatttgttttcattatggcttacacccagcaatgttgaggttgatgggggaaattaaagggaagtagataatttgatt--------------------------------------------------

upper sequence: GRMZM2G069631_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 8
ATCCAACTCACTGTAATACACTAGCATATAGTAGCTCAAAGGGTACTATTCGGCTTATTGATCTGCGACAGTCAGCACTGTGTGACAACCATGCTAAACTgttagtaaccccccttgaacttcagtaacattattgttgattagaaggcaatgcttagattttatcatttctaatggctacaaacattttaagtttatttattggtcatggtcttatctggtttaactggggcatcttgttcag
| || || || ||||| |   ||||||||||||| ||||| ||  | || || |||| |||| ||||||||||||||||||||||    ||| ||||| ||| |||  |   | |     || |||  |||| || ||  ||   |     |  | | ||  ||| ||   | | ||  | | | ||   | |   ||  | |                                         
ACCCTACCCATTGTAACATGTTAGCATATAGTAGTTCAAAAGGCTCAATCCGCCTTAATGATTTGCGACAGTCAGCACTGTGTGATTCTCATTCTAAATTgtgagtggcttgctt---gttttagt--catttttattttttttcat-ttgtcttaaaataatataataggtgaagg--agagaaatcaaatggcaatagaataactc------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211227826|gb|FL399539.1|FL399539
EST:     CGGCTTATTGATCTGCGACAGTCAGCACTGTGTGACAACCATGCTAAACT                         ATTTGAGGAGCATGAAGCACCTGGGTCAAGATCCTTTTTTACAGAGATAAT
genomic: CGGCTTATTGATCTGCGACAGTCAGCACTGTGTGACAACCATGCTAAACTgttagtaacc ... tcttgttcagATTTGAGGAGCATGAAGCACCTGGATCAAGATCCTTTTTTACAGAGATAAT
EST: gi|71772341|gb|DR970277.1|DR970277
EST:     CGGCTTATTGATCTGCGACAGTCAGCACTGTGTGACAACCATGCTAAACT                         ATTTGAGGAGCATGAAGCACCTGGATCAAGATCCTTTTTTACAGAGATAAT
genomic: CGGCTTATTGATCTGCGACAGTCAGCACTGTGTGACAACCATGCTAAACTgttagtaacc ... tcttgttcagATTTGAGGAGCATGAAGCACCTGGATCAAGATCCTTTTTTACAGAGATAAT