Sequence
atgc intronic sequence ATGC exonic sequenceCAAATGCTCCAGAAGTTGTTAGGGGCCTTTTTGTTCCTGAACTTAAAGGAAATGGAGCTACAGGCCTTGCTATCTCATTACTTGGTGCTATGGTGATGCCgtaagcttctttttctatctttctgttcccaagcatttggtttagaacataagacctttttccatttatctgttacataaattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G069198_T04 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os06g46310.3 (Oryza sativa), 5'ss of exon 8
CAAATGCTCCAGAAGTTGTTAGGGGCCTTTTTGTTCCTGAACTTAAAGGAAATGGAGCTACAGGCCTTGCTATCTCATTACTTGGTGCTATGGTGATGCCgtaagcttctttttctatctttctgttcccaagcatttggtttagaac--ataagacctttttccatttatctgttacataaattgcag
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CAAATTCTTCAGAAGTTGTGAGGGGCCTTTTTGTTCCTGAACTTAAAGGGAATGGAGCCACAGGTCTTGCTATCTCACTACTTGGTGCTATGGTGATGCCgtgagcttcctgtccaccccttttgt-cccaaacatatctttaactttcgacaaaaacattttccatgtat----tattcttattacag
upper sequence: GRMZM2G069198_T04 (Zea mays), 5'ss of exon 8
lower sequence: AT1G80830.1 (Arabidopsis thaliana), 5'ss of exon 7
CAAATGCTCCAGAAGTTGTTAGGGGCCTTTTTGTTCCTGAACTTAAAGGAAATGGAGCTACAGGCCTTGCTATCTCATTACTTGGTGCTATGGTGATGCCgtaagcttctttttctatctttctgttcccaagcatttggtttagaacataagacctttttccatttatctgttacataaattgcag
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CAGACCCAGGAGAAGTCCTACATGGTCTCTTTGTTCCTCAACTTAAAGGAAATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCCgtaagctcactctctctcttcaccaccattcatcataagattctttgc-tgagaacaacatctgttc-tctgcag------------
upper sequence: GRMZM2G069198_T04 (Zea mays), 5'ss of exon 8
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 5'ss of exon 8
CAAATGCTCCAGAAGTTGTTAGGGGCCTTTTTGTTCCTGAACTTAAAGGAAATGGAGCTACAGGCCTTGCTATCTCATTACTTGGTGCTATGGTGATGCCgtaagcttctttt-tctatc-------tttctgttcccaagcatttggtttagaacataagacctttttccattta-tctgttacataaattgcag
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CCAATTCTTCAGAAGTCTTGCGTGGACTCTTTGTTCCACAACTCAAAGGAAATGGTGCTACTGGTCTTGCAATTTCCCTCCTTGGTGCTATGGTTATGCCgtaagtttcttatgtccatgagaagtgcttatttttccatgcattt--ttcaaaaaaatattctcttctttgttgactctcatgcacttgctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88757771|gb|DY541912.1|DY541912EST: AATGGAGCTACAGGCCTTGCTATCTCATTACTTGGTGCTATGGTGATGCC GCACAATCTTTTTCTGCACTCAGCATTAGTATTGTCAAGAAAAGTGCCACG
genomic: AATGGAGCTACAGGCCTTGCTATCTCATTACTTGGTGCTATGGTGATGCCgtaagcttct ... taaattgcagGCACAATCTTTTTCTGCACTCAGCATTAGTATTGTCAAGAAAAGTGCCACG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAATGCTCCAGAAGTTGTTAGGGGCCTTTTTGTTCCTGAACTTAAAGGAAATGGAGCTACAGGCCTTGCTATCTCATTACTTGGTGCTATGGTGATGCCgtaagcttctttttctatctttctgttcccaagcatttggtttagaacataagacctttttccatttatctgttacataaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT