Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   		30  
 5'  3'   		31  
 5'  3'   		32  
 5'  3'   		33  
 5'  3'   		34  
 5'  3'   		35  
 5'  3'   		36  
 5'  3'   		37  
 5'  3'   		38  
 5'  3'   		39  
 5'  3'   		40  
 5'  3'   
41  
 5'  3'   		42  
 5'  3'   		43  
 5'  3'   		44  
 5'  3'   		45  
 5'  3'   		46  
 5'  3'   		47  
 5'  3'   		48  
 5'  3'   		49  
 5'  3'   		50  
 5'  3'   		51  
 5'  3'   		52  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCTGTGGAGATCGATGAATATGACCTTGTTGATCCTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTCTGGGACGGTGTGgtatgggacctgtcttgaatgcacacgctattggtcacactatcgtatgaaaagtagttattatattagtttttgttgtctgatgtcag

Basic information

species Zea mays
transcript GRMZM2G068755_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G068755_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g60040.1 (Oryza sativa), 5'ss of exon 8
CCCCTGTGGAGATCGATGAATATGACCTTGTTGATCCTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTCTGGGACGGTGTGgtatgggacctgtcttgaatgca-------cacgctattggtcacactatcgta-tgaaaagtagttattatattagt-------ttttgttgtctgatgtcag
||||| |||||||||||||||| || |||||||||||||| || || ||||| ||||| || ||||||||||| ||||| ||||||||||| |  |||  |||| ||||        ||  | |   |||||  ||  || |||||  | ||  |  | | | |       ||||||| ||||||  |||
CCCCTATGGAGATCGATGAATACGATCTTGTTGATCCTGTTGATATCTTAACACCACTTGAGAAGTCTGGATTTTGGGATGGTGTGgtatgtg--ctgatttgagtgcagcattgatacattgtccatcacaacattatagtgaaatattgtcctcttttgaatgattctattttgttatctgataccag

upper sequence: GRMZM2G068755_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g60050.1 (Oryza sativa), 5'ss of exon 7
--------------CCCCTGTGGAGATCGATGAATATGACCTTGTTGATCCTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTCTGGGACGGTGTGgtatgggacctgtcttgaatgcacacgctattggtcacactatcgtatgaaaagtagttattatattagtt--------tttgttgtctgatgtcag
              |      |  ||||||||| ||||| ||||||||||||||| | |  ||||| ||||  ||  ||||||||||||| || |||||||||||     ||  | | |     ||  | || ||||||||||  ||   |||    ||| | | || |||        |||||| | ||||  |||
GTGTTATGATTGTACATGGACGTTGATCGATGAGTATGATCTTGTTGATCCTGTACATACCTTAACACCACCTGAGGAGTCTGGATTCTGTGATGGTGTGgtatg-----tgcatcgga-----acattgttcgtcacactattatagttaaatatcttactctttttgttgatattgttttgttttttgataccag

upper sequence: GRMZM2G068755_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA15G29520.1 (Glycine max), 5'ss of exon 5
CCCCTGTGGAGATCGATGAATATGACCTTGTTGATCCTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTCTGGGACGGTGTGgtatgggacctg-------tcttgaat-gcacacgctattggtcacactatcgtatgaaaagtagttattatattagtttttgttgtctgatgtcag
| |||   || |||||||||||||| |||||||||||||| || || || || ||  |||| ||||| ||||| ||||| || || ||  |    |||       ||||| || | || |  ||       |||  |  | | |    ||    ||  | ||  | |||||     || ||||
CTCCTCAAGAAATCGATGAATATGAACTTGTTGATCCTGTTGATATATTGACTCCTTTAGAGAAGTCAGGATTTTGGGATGGAGTTgttagttttctgccccatctcttggattgtactcagtaactaatgcacctttattttagctatatgagtttgaatatgtcttgttaat--at-tcag

upper sequence: GRMZM2G068755_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv10s0116g00490.t01 (Vitis vinifera), 5'ss of exon 8
CCCCTGTGGAGATCGATGAATATGACCTTGTTGATCCTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTCTGGGACGGTGTGgtatgggacctgtcttgaatgcacacgctatt-ggtcacact--------atcgtatga------aaagtagttattatattagtttttgttgtctgatgtcag----------------------------------
| |||  ||| || ||||||||||| ||||| |||||||| || || || |||||  |||||||||| ||||| ||||| || |||||  | |   | |||      ||     ||||  || ||| |        ||  | |        ||    ||| |||| ||  | | |      || | | ||                                  
CTCCTCAGGAAATAGATGAATATGAACTTGTCGATCCTGTTGATATATTGACCCCTTTAGAAAAGTCAGGATTTTGGGATGGAGTGgtcagtgctttctctctctctcatctcttattcagtgacatttgctacttattttgttgtgttttaatactgttgttattttgatctctcaatcatgttattagaggttagttctttaacattttgtttgtcctttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211517040|gb|FL438272.1|FL438272
EST:     CTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTCTGGGACGGTGTG                         AAAGCAACAAAATGGTCTGAGAGAAGGGATGCTGTGGCAGAATTAACCAAG
genomic: CTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTCTGGGACGGTGTGgtatgggacc ... ctgatgtcagAAAGCAACAAAATGGTCTGAGAGAAGGGATGCTGTGGCAGAATTAACCAAG
EST: gi|18963448|gb|BM660440.1|BM660440
EST:     CTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTCTGGGACGGTGTG                         AAAGCAACAAAATGGTCTGAGAGAAGGGATGCTGTGGCAGAATTAACCAAG
genomic: CTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTCTGGGACGGTGTGgtatgggacc ... ctgatgtcagAAAGCAACAAAATGGTCTGAGAGAAGGGATGCTGTGGCAGAATTAACCAAG
EST: gi|32934909|gb|CF039721.1|CF039721
EST:     CTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTCTGGGACGGTGTG                         AAAGCAACAAAATGGTCTGAGAGAAGGGATGCTGTGGCAGAATTAACCAAG
genomic: CTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTCTGGGACGGTGTGgtatgggacc ... ctgatgtcagAAAGCAACAAAATGGTCTGAGAGAAGGGATGCTGTGGCAGAATTAACCAAG