1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGCATTCAGATGGATAACCTTACTGCTGACCCAGGAATTCAACTTCGCCGACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAGgtgagccgcgagcgcgcacactgtttcttctgctctggaattatctttggctctgtttctttgcctaaactttgtctgctgaacacag
species | Zea mays |
transcript | GRMZM2G068392_T03 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAG GAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGCEST: gi|50331307|gb|CO526433.1|CO526433
genomic: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAGgtgagccgcg ... ctgaacacagGAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGC
EST: ACACCATTCACATCTGGGACATACTATTAAGTGATCCTGGTGGCCCCCAG GAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGCEST: gi|18171551|gb|BM341391.1|BM341391
genomic: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAGgtgagccgcg ... ctgaacacagGAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGC
EST: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAG GAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGCEST: gi|18170879|gb|BM340719.1|BM340719
genomic: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAGgtgagccgcg ... ctgaacacagGAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGC
EST: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAG GAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGC
genomic: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAGgtgagccgcg ... ctgaacacagGAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCATTCAGATGGATAACCTTACTGCTGACCCAGGAATTCAACTTCGCCGACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAGgtgagccgcgagcgcgcacactgtttcttctgctctggaattatctttggctctgtttctttgcctaaactttgtctgctgaacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG