1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGACGGCGACGTGACGGCGGCGCGCGGCGCGTTCGGGCTGGAGTGGCCCGAGCCCCTCGTCACCTTCGCGCTCTCCTGCGGCAGCTGGTCGTCCCCCGCGgtacaccgtacactagggttcttttattatttgcatatatatatggtctaggctgcaattatttatattaacggaacaatgcatgcag
species | Zea mays |
transcript | GRMZM2G066516_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGCCCCTCGTCACCTTCGCGCTCTCCTGCGGCAGCTGGTCGTCCCCCGCG GTGAGGGTGTACACGGCGGCGCGCGTGGAGGAGGAGCTGGAGGCGGCGAAGEST: gi|149101218|gb|EE187329.2|EE187329
genomic: AGCCCCTCGTCACCTTCGCGCTCTCCTGCGGCAGCTGGTCGTCCCCCGCGgtacaccgta ... atgcatgcagGTGAGGGTGTACACGGCGGCGCGCGTGGAGGAGGAGCTGGAGGCGGCGAAG
EST: AGCCCCTCGTCACCTTCGCGCTCTCCTGCGGCAGCTGGTCGTCCCCCGCG GTGAGGGTGTACACGGCGGCGCGCGTGGAGGAGGAGCTGGAGGCGGCGAAGEST: gi|67015405|gb|CO444154.1|CO444154
genomic: AGCCCCTCGTCACCTTCGCGCTCTCCTGCGGCAGCTGGTCGTCCCCCGCGgtacaccgta ... atgcatgcagGTGAGGGTGTACACGGCGGCGCGCGTGGAGGAGGAGCTGGAGGCGGCGAAG
EST: AGCCCCTCGTCACCTTCGCGCTCTCCTGCGGCAGCTGGTCGTCCCCCGCG GTGAGGGTGTACACCGCGGCNCGCGTGGAGGAGGAGCTGGAGGCGGCGAAEST: gi|94478763|gb|EB707721.1|EB707721
genomic: AGCCCCTCGTCACCTTCGCGCTCTCCTGCGGCAGCTGGTCGTCCCCCGCGgtacaccgta ... atgcatgcagGTGAGGGTGTACACGGCGGCGCGCGTGGAGGAGGAGCTGGAGGCGGCGAA
EST: AGCCCCTCGTCACCTTCGCGCTCTCCTGCGGCAGCTGGTCGTCCCCCGCG GTGAGGGTGTACACGGCGGCGCGCGTGGAGGAGGAGCTGGAGGCGGCGAAGEST: gi|88749193|gb|DY533334.1|DY533334
genomic: AGCCCCTCGTCACCTTCGCGCTCTCCTGCGGCAGCTGGTCGTCCCCCGCGgtacaccgta ... atgcatgcagGTGAGGGTGTACACGGCGGCGCGCGTGGAGGAGGAGCTGGAGGCGGCGAAG
EST: AGCCCCTCGTCACCTTCGCGCTCTCCTGCGGCAGCTGGTCGTCCCCCGCG GTGAGGGTGTACACGGCGGCGCGCGTGGAGGAGGAGCTGGAGGCGGCGAAGEST: gi|148956148|gb|EC901923.2|EC901923
genomic: AGCCCCTCGTCACCTTCGCGCTCTCCTGCGGCAGCTGGTCGTCCCCCGCGgtacaccgta ... atgcatgcagGTGAGGGTGTACACGGCGGCGCGCGTGGAGGAGGAGCTGGAGGCGGCGAAG
EST: AGCCCCTCGTCACCTTCGCGCTCTCCTGCGGCAGCTGGTCGTCCCCCGCG GTGAGGGTGTACACGGCGGCGCGCGTGGAGGAGGAGCTGGAGGCGGCGAAG
genomic: AGCCCCTCGTCACCTTCGCGCTCTCCTGCGGCAGCTGGTCGTCCCCCGCGgtacaccgta ... atgcatgcagGTGAGGGTGTACACGGCGGCGCGCGTGGAGGAGGAGCTGGAGGCGGCGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACGGCGACGTGACGGCGGCGCGCGGCGCGTTCGGGCTGGAGTGGCCCGAGCCCCTCGTCACCTTCGCGCTCTCCTGCGGCAGCTGGTCGTCCCCCGCGgtacaccgtacactagggttcttttattatttgcatatatatatggtctaggctgcaattatttatattaacggaacaatgcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG