1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTTTTGTTGGGTATGCCATTCTTGCTGTCACATCCAGTTGAGTACATCTCAAGAGCATTCAATCTCGGTCGCGTGTTTATCCATTTCTGgtgtgtataatatttcatgatttttgaaccatttcagcagcaacagtatgacatacgtatcacaccctagatgtgattatgtaattatgcagtgttaactgttttgtgtttttcag
species | Zea mays |
transcript | GRMZM2G066362_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAGTACATCTCAAGAGCATTCAATCTCGGTCGCGTGTTTATCCATTTCTG GTCTGTGAACTTTAAATTCGTCCCAGAGAAGGTGTTTGTATCGAAAGAGCTEST: gi|148950403|gb|EC895970.2|EC895970
genomic: GAGTACATCTCAAGAGCATTCAATCTCGGTCGCGTGTTTATCCATTTCTGgtgtgtataa ... tgtttttcagGTCTGTGAACTTTAAATTCGTCCCAGAGAAGGTGTTTGTATCGAAAGAGCT
EST: GAGTACATCTCAAGAGCATTCAATCTCGGTCGCGTGTTTATCCATTTCTG GTCTGTGAACTTTEST: gi|32941922|gb|CF046741.1|CF046741
genomic: GAGTACATCTCAAGAGCATTCAATCTCGGTCGCGTGTTTATCCATTTCTGgtgtgtataa ... tgtttttcagGTCTGTGAACTTT
EST: ACATCTCAAGAGCATTCAATCTCGGTCGCGTGTTTATCCATTTCTG GTCTGTGAACTTTAAATTCGTCCCAGAGAAGGTGTTTGTATCGAAAGAGCTEST: gi|211482896|gb|FL084116.1|FL084116
genomic: ACATCTCAAGAGCATTCAATCTCGGTCGCGTGTTTATCCATTTCTGgtgtgtataa ... tgtttttcagGTCTGTGAACTTTAAATTCGTCCCAGAGAAGGTGTTTGTATCGAAAGAGCT
EST: CTCGGTCGCGTGTTTATCCATTTCTG GTCTGTGAACTTTAAATTCGTCCCAGAGAAGGTGTTTGTATCGAAAGAGCT
genomic: CTCGGTCGCGTGTTTATCCATTTCTGgtgtgtataa ... tgtttttcagGTCTGTGAACTTTAAATTCGTCCCAGAGAAGGTGTTTGTATCGAAAGAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTGTTGGGTATGCCATTCTTGCTGTCACATCCAGTTGAGTACATCTCAAGAGCATTCAATCTCGGTCGCGTGTTTATCCATTTCTGgtgtgtataatatttcatgatttttgaaccatttcagcagcaacagtatgacatacgtatcacaccctagatgtgattatgtaattatgcagtgttaactgttttgtgtttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA