1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTGCAATTCACAGAAAGGTTGGCCATTTTTTCAGCGACTGCTTGTTGCTCTTCTCAAGTTCATGGAACCATATCTGAGAAATGCTGAACTCCCAGAGGCGgtaagtttttgtagtttttgcactctactagcctgattcaaggtatacttaatttttatgttgtatatacttttttgcag
species | Zea mays |
transcript | GRMZM2G065130_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTCTCAAGTTCATGGAACCATATCTGAGAAATGCTGAACTCCCAGAGGCG ATGGACCTTTTATACAAGGGAACTATGCGAGTTCTGCTTGTACTACTGCATEST: gi|211183842|gb|FL001299.1|FL001299
genomic: TTCTCAAGTTCATGGAACCATATCTGAGAAATGCTGAACTCCCAGAGGCGgtaagttttt ... ttttttgcagATGGACCTTTTATACAAGGGAACTATGCGAGTTCTGCTTGTACTACTGCAT
EST: TTCTCAAGTTCATGGAACCATATCTGAGAAATGCTGAACTCCCAGAGGCG ATGGACCTTTTATACAAGGGAACTATGCGAGTTCTGCTTGTACTACTGCATEST: gi|74243504|gb|DT651418.1|DT651418
genomic: TTCTCAAGTTCATGGAACCATATCTGAGAAATGCTGAACTCCCAGAGGCGgtaagttttt ... ttttttgcagATGGACCTTTTATACAAGGGAACTATGCGAGTTCTGCTTGTACTACTGCAT
EST: TTCTCAAGTTCATGGAACCATATCTGAGAAATGCTGAACTCCCAGAGGCG ATGGACCTTTTATACAAGGGAACTATGCGAGTTCTGCTTGTACTACTGCATEST: gi|211190227|gb|FL310797.1|FL310797
genomic: TTCTCAAGTTCATGGAACCATATCTGAGAAATGCTGAACTCCCAGAGGCGgtaagttttt ... ttttttgcagATGGACCTTTTATACAAGGGAACTATGCGAGTTCTGCTTGTACTACTGCAT
EST: TTCTCAAGTTCATGGAACCATATCTGAGAAATGCTGAACTCCCAGARGCG ATGGACCTTTTATACAAGGGAACTATGCGAGTTCTGCTTGTACTACTGCATEST: gi|211183841|gb|FL001298.1|FL001298
genomic: TTCTCAAGTTCATGGAACCATATCTGAGAAATGCTGAACTCCCAGAGGCGgtaagttttt ... ttttttgcagATGGACCTTTTATACAAGGGAACTATGCGAGTTCTGCTTGTACTACTGCAT
EST: TTCTCAAGTTCATGGAACCATATCTGAGAAATGCTGAACTCCCAGAGGCG ATGGACCTTTTATACAAGGGAACTATGCGAGTTCTGCTTGTACTACTGCAT
genomic: TTCTCAAGTTCATGGAACCATATCTGAGAAATGCTGAACTCCCAGAGGCGgtaagttttt ... ttttttgcagATGGACCTTTTATACAAGGGAACTATGCGAGTTCTGCTTGTACTACTGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCAATTCACAGAAAGGTTGGCCATTTTTTCAGCGACTGCTTGTTGCTCTTCTCAAGTTCATGGAACCATATCTGAGAAATGCTGAACTCCCAGAGGCGgtaagtttttgtagtttttgcactctactagcctgattcaaggtatacttaatttttatgttgtatatacttttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG