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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCACTTCAATCGTCGATGGGCTAAAGAAATCGTACATTGAGAAGTTGAGGCCCTTGGAAAAAACCTATCAGTTCCATGACTTCGTGTCTCCCTTGCTGgtaattttcactcctttgttttatctgcagtttaatttgttctacaacaaaggtaaatctgttgtaaagtgttgtgtcgctcctttgctggtaatttctgcccccctccccttcaaacag

Basic information

species Zea mays
transcript GRMZM2G065012_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G065012_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os04g57350.1 (Oryza sativa), 5'ss of exon 8
AGTCACTTCAATCGTCGATGGGCTAAAGAAATCGTACATTGAGAAGTTGAGGCCCTTGGAAAAAACCTATCAGTTCCATGACTTCGTGTCTCCCTTGCTGgtaattttcactcctttgttttatctgcagtttaatttgttctacaacaaaggtaaatc-tgttgtaaag--tgttgtgtcgctcctttgctggtaatttctgcccccctccccttcaaacag
||| ||||| ||| |||||||| |||||||||| ||||||||||||||||||||  | |||||||| ||||||||| ||||||| || || || ||||||||   | ||||  |  |  |  |  |  | ||| |  | | |||   ||  | |   |  ||   ||| |  || |   ||    || | ||||   | | |                     
AGTTACTTCGATCATCGATGGGTTAAAGAAATCTTACATTGAGAAGTTGAGGCCACTAGAAAAAACATATCAGTTCGATGACTTTGTTTCACCTTTGCTGgtg--tgtcacctcccttatgaacttcaaatttcacatatactattccatcgcttgttggtgaaataatgcttgatacatcttatctattctgggtgtgttt---------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50323441|gb|CO518567.1|CO518567
EST:     CTATCAGTTCCATGACTTCGTGTCTCCCTTGCTG                         ACTAGCAGCGATTTCGATGCGAAGCCAATGGTCATGCTGTTGGGTCAATAC
genomic: CTATCAGTTCCATGACTTCGTGTCTCCCTTGCTGgtaattttca ... cttcaaacagACTAGCAGCGATTTCGATGCGAAGCCAATGGTCATGCTGTTGGGTCAATAC
EST: gi|71333237|gb|DR803673.1|DR803673
EST:     GGCCCTTGGAAAAAACCTATCAGTTCCATGACTTCGTGTCTCCCTTGCTG                         ACTAGCAGCGATTTCGATGCGAAGCCAATGGTCATGCTGTTGGGTCAATAC
genomic: GGCCCTTGGAAAAAACCTATCAGTTCCATGACTTCGTGTCTCCCTTGCTGgtaattttca ... cttcaaacagACTAGCAGCGATTTCGATGCGAAGCCAATGGTCATGCTGTTGGGTCAATAC
EST: gi|71769027|gb|DR966964.1|DR966964
EST:     GGCCCTTGGAAAAAACCTATCAGTTCCATGACTTCGTGTCTCCCTTGCTG                         ACTAGCAGCGATTTCGATGCGAAGCCAATGGTCATGCTGTTGGGTCAATAC
genomic: GGCCCTTGGAAAAAACCTATCAGTTCCATGACTTCGTGTCTCCCTTGCTGgtaattttca ... cttcaaacagACTAGCAGCGATTTCGATGCGAAGCCAATGGTCATGCTGTTGGGTCAATAC
EST: gi|78124010|gb|DV542394.1|DV542394
EST:     GGCCCTTGGAAAAAACCTATCAGTTCCGTGACTTCGTGTCTCCCTTGCTG                         ACTAGCAGCGATTTCGATGCAAAGCCAGGGGTCGTGCTGTGGGGTCAATAC
genomic: GGCCCTTGGAAAAAACCTATCAGTTCCATGACTTCGTGTCTCCCTTGCTGgtaattttca ... cttcaaacagACTAGCAGCGATTTCGATGCGAAGCCAATGGTCATGCTGTTGGGTCAATAC