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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCTTCAGCTTCGGCGTCGTTGTGCTGGAGCTCATCACCGGCCGGCAGCCCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttgctgccgcggttcggttcggttcacaacaggcagaagcttatccatgggcatgggctggtcgtgcag

Basic information

species Zea mays
transcript GRMZM2G063897_T03
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149079247|gb|EE168216.2|EE168216
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|101381689|gb|EB812902.1|EB812902
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|211379255|gb|FL380067.1|FL380067
EST:     CATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGA
genomic: CATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACT-CTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGA
EST: gi|148965766|gb|EE016644.2|EE016644
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|149074192|gb|EE162555.2|EE162555
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|93013269|gb|EB638789.1|EB638789
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|76011609|gb|DT938779.1|DT938779
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|148948862|gb|EC894272.2|EC894272
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|74239346|gb|DT647260.1|DT647260
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|148965161|gb|EE015973.2|EE015973
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|148944900|gb|EC890059.2|EC890059
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|148958766|gb|EC905045.2|EC905045
EST:     CATCCACAAGTCGTTGTCGACGAGGGCCGACGAGAGGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CATCCACAAGTCGTCGTCGACGAGGGCCGACGAGA-GCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|148941684|gb|EC886631.2|EC886631
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|71330865|gb|DR802230.1|DR802230
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|148950042|gb|EC895574.2|EC895574
EST:     GGCCGGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: GGCC-GACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|149112700|gb|EE295533.2|EE295533
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|148999858|gb|EE036888.2|EE036888
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|148965208|gb|EE016014.2|EE016014
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|149014181|gb|EE043728.2|EE043728
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|148930789|gb|EC873135.2|EC873135
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|148991622|gb|EE033156.2|EE033156
EST:     CCATTCACAAGTTGTCGTTGACGAGGGCGGACGAGAGCTTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|78086185|gb|DV514578.1|DV514578
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|78079839|gb|DV508251.1|DV508251
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|148958131|gb|EC904330.2|EC904330
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|50333337|gb|CO528463.1|CO528463
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|50323692|gb|CO518818.1|CO518818
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|148974269|gb|EE025038.2|EE025038
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|149009748|gb|EE154084.2|EE154084
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|78123256|gb|DV541640.1|DV541640
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|149010820|gb|EE042199.2|EE042199
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|76927186|gb|DV171168.1|DV171168
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|149104766|gb|EE290224.2|EE290224
EST:     GCCTTGTACTTTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: GCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|88752061|gb|DY536202.1|DY536202
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|71758257|gb|DR956194.1|DR956194
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|149089434|gb|EE178675.2|EE178675
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|88757443|gb|DY541584.1|DY541584
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|148945482|gb|EC890718.2|EC890718
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|149087795|gb|EE287125.2|EE287125
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|149088849|gb|EE177980.2|EE177980
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
EST: gi|86474993|gb|DY241363.1|DY241363
EST:     CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGG                         GCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC
genomic: CCATCCACAAGTCGTCGTCGACGAGGGCCGACGAGAGCCTCGTACTCTGGgtgcgtgttg ... ggtcgtgcagGCGACGTCGCGGCTGCGGGACAGCGGGCTGGTGGTCACGGAGCTGCCGGAC