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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTAATATGGTTGCAGCTCATGTCTATAAGACAATAGATGCTCTCCCAGTAGATGCACATCCTATGACACAGTTTACCACAGGAGTAATGGCTCTTCAGgtgattacatttctgtcatgctcttttctaaatataatatcataattgtgaaataaaatagcattttccttgtgatttatttgcactttttagaattgga...

Basic information

species Zea mays
transcript GRMZM2G063851_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063851_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os11g33240.3 (Oryza sativa), 5'ss of exon 8
AATTAATATGGTTGCAGCTCATGTCTATAAGACAATAGATGCTCTCCCAGTAGATGCACATCCTATGACACAGTTTACCACAGGAGTAATGGCTCTTCAGgtgattacatttctgtcatgctcttttctaa---atataatatcataattgtgaaataaaatagcattttccttgtgatttatttgca--ctttttagaattgga
                   ||||| |||||| |||| ||||||||||| |||  ||| ||||| |||||||||||||||||||| || ||||| ||||| || |  ||| ||||    | ||  ||| |||    ||  ||||||      ||||||||||    | | |  |||  ||||||||| |  | | ||  | |    
-----------------GCCATGTGTATAAGGCAATTGATGCTCTCCCTGTAACTGCTCATCCAATGACACAGTTTACCACAGGGGTGATGGCACTTCAAgtaa--acacttcttcttttcttgtttttaatttgtagcatatcactcccctgaaataaaaacatactctg-ttgccatttatttgaaagcatatttaattct--

upper sequence: GRMZM2G063851_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 9
AATTAATATGGTTGCAGCTCATGTCTATAAGACAATAGATGCTCTCCCAGTAGATGCACATCCTATGACACAGTTTACCACAGGAGTAATGGCTCTTCAGgtga---ttaca-tttctgtcatgc-tcttttctaaatata-atatcataattgtgaaataaaatagcattttccttgtgatttatttgcactttttagaattgga
                  |||||| ||| || |||| |||||||| || |||  ||| ||||| ||||| ||||||||||||||||| ||||| |||||||| |   ||  |   | | |||  | |||    |||||| | ||    |        | |  ||  | || ||  || ||       ||||  |   | |      
-----------------GTCATGTGTATGAGGCAATCGATGCTCTTCCTGTAACTGCTCATCCGATGACCCAGTTTACCACAGGAGTGATGGCACTTCAGgtaaaccttgtagcatatatcactcatctgaaataaatacatattctgttgccacttatttgaa-ggtatatttattttggagatggtgcatgtaaaaaag-----