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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGACGTCCTGTCGCACGGCAATCAGGTTCAGGAGGTGTCGCGCATCCCCAACGGCTCCAACCCCGGAAACTGCATCTCCCTGCTGAGAgtgagcaaccgaccagtcatctcttgctcctccgtcgtccattaaacgcgcactgtgcactgtgctgttggattatgacggttttgacgatgacgaccactgacgacggcgcgcgacgtcgcag

Basic information

species Zea mays
transcript GRMZM2G062318_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G062318_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os06g10600.1 (Oryza sativa), 5'ss of exon 8
----TGGGACGTCCTGTCGCACGGCAATCAGGTTCAGGAGGTGTCGCGCATCCCCAACGGCTCCAACCCCGGAAACTGCATCTCCCTGCTGAGAgtgagcaacc-gaccagtcatctcttgctcctccgtcgtccattaaacgcgcact-gtgcactgtgctgttggattatgacggttttgacgatgacgaccactgacgacggcgcgcgacgtcgcag
       | |||| |  | ||  ||   ||  | ||   ||   | ||  |||||  || |  |  |  ||    || | ||  |     ||      ||  || |  ||| ||||   |    ||||| | |  ||  | ||| ||||    ||||||||      |||    | | |     |  |||| ||  |  | |||||   | |        
GCCCAACGGCGTCGT-CCTCAGCGCCGCCACCTCCATCTGGCTCCCCG--TCCCCTGCGACCACGTCTTCGC---CTTCGTCCGCGACGAGAACACCCGCTCCCAGgtcagccatccact--ctctccgccattgat--atcgctcactcactcactgtgcccgcc-attgctgctgctgcagtgg-gacgtcctgtcgc-acggcaatcaag-------