Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcagcttgacactgaacctttcgctaatccgttacaaaagtgcattctgtaattatttctccgttcggttgtggtgattgttgagtatgtgactcttagtaacacatacttattgatctgatcgcag

Basic information

species Zea mays
transcript GRMZM2G061928_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061928_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os04g59040.1 (Oryza sativa), 5'ss of exon 8
ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaag--ctcagcttgacactgaacctttcgctaatccgttacaaaagtgcattctgta-attatttctccgttcggttgtggtgattgttgagtatgtgactcttagtaacacatacttattgatctgatcgcag
| |||||||||||||| || ||||||||||| ||||||||||||||||| | ||| ||||| || ||||||||||||||||||||||  ||| | |   || ||||   |     | ||| | |||| |    ||| |||   || |      | |  |  |     | | ||   | ||  |    | |  ||| ||  || || || | ||| |||
ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAACACTGCTCGTGACGCCATTCAGTACTCCATgtaagttctctgttctgcagtgaaatata----agtccataacaagatgtgattgtgtgtgttgtggaataggtatgaagataccactattccttttggcatatattgacacatatttttgtttatttaatctcag

upper sequence: GRMZM2G061928_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os04g59040.3 (Oryza sativa), 5'ss of exon 7
------------------ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaag--ctcagcttgacactgaacctttcgctaatccgttacaaaagtgcattctgta-attatttctccgttcggttgtggtgattgttgagtatgtgactcttagtaacacatacttattgatctgatcgcag
                  | |||||||||||||| || ||||||||||| ||||||||||||||||| | ||| ||||| || ||||||||||||||||||||||  ||| | |   || ||||   |     | ||| | |||| |    ||| |||   || |      | |  |  |     | | ||   | ||  |    | |  ||| ||  || || || | ||| |||
TTAACAATATGTTTTTAGACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAACACTGCTCGTGACGCCATTCAGTACTCCATgtaagttctctgttctgcagtgaaatata----agtccataacaagatgtgattgtgtgtgttgtggaataggtatgaagataccactattccttttggcatatattgacacatatttttgtttatttaatctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211148121|gb|FK994989.1|FK994989
EST:     GATGCATTCTTGCCTGCGAC-ACAGCTCGAGAGGGCATTCAGTACTCCAT                         GGATCTGTATGCGCAGT
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGT
EST: gi|5770204|gb|AI973378.1|AI973378
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|74237956|gb|DT645870.1|DT645870
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATG
EST: gi|24768592|gb|CA403721.1|CA403721
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|4834930|gb|AI670156.1|AI670156
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|211328726|gb|FL322907.1|FL322907
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|101401489|gb|EB822424.1|EB822424
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|5847103|gb|AW000182.1|AW000182
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|5847111|gb|AW000190.1|AW000190
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|78104561|gb|DV522979.1|DV522979
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|60347915|gb|DN214888.1|DN214888
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|5006060|gb|AI712122.1|AI712122
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|60349652|gb|DN216625.1|DN216625
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|67012300|gb|CO441049.1|CO441049
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAAGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGACGCAGTANATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|211402007|gb|FL112901.1|FL112901
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|7118905|gb|AW497510.1|AW497510
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|67017766|gb|CO446515.1|CO446515
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAA
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAA-
EST: gi|5901415|gb|AW042515.1|AW042515
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGCATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|60339231|gb|DN206204.1|DN206204
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|37379431|gb|CF626460.1|CF626460
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|6865274|gb|AW360624.1|AW360624
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|76012232|gb|DT939402.1|DT939402
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|60348025|gb|DN214998.1|DN214998
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|60344717|gb|DN211690.1|DN211690
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|28873765|gb|CB329709.1|CB329709
EST:     GATGCATTTTTGCCTGCGACCCCAGCTCGAGAGGCCCTTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|60343029|gb|DN210002.1|DN210002
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|71759727|gb|DR957664.1|DR957664
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|60396650|gb|DN229518.1|DN229518
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|32931451|gb|CF036263.1|CF036263
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGACTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|67012010|gb|CO440759.1|CO440759
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|32909251|gb|CF014063.1|CF014063
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|24764070|gb|CA399239.1|CA399239
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|5714350|gb|AI944335.1|AI944335
EST:     GATGCATTCTTGCCTGCGACCCCAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|60398608|gb|DN231424.1|DN231424
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|18177630|gb|BM378840.1|BM378840
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|67014869|gb|CO443618.1|CO443618
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|76285558|gb|DV025126.1|DV025126
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|211067607|gb|FL464883.1|FL464883
EST:     GATGCATTTTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|5757339|gb|AI964626.1|AI964626
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|5296191|gb|AI782871.1|AI782871
EST:     TGCATTCTTGCCTGCGACCACAGGCCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: TGCATTCTTGCCTGCGACCACAG-C-TCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|60399757|gb|DN232567.1|DN232567
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|60339839|gb|DN206812.1|DN206812
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|9953369|gb|BE639952.1|BE639952
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|31909407|gb|CD650903.1|CD650903
EST:     ATGCATTCTTGCCCTGCGACCCCAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: ATGCATTCTTGCC-TGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|60346798|gb|DN213771.1|DN213771
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|6012425|gb|AW061862.1|AW061862
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|166616056|gb|EG230717.1|EG230717
EST:     GCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGC
genomic: GCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGC
EST: gi|76285559|gb|DV025127.1|DV025127
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|113701996|gb|EE679500.1|EE679500
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|37423391|gb|CF649423.1|CF649423
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|78104562|gb|DV522980.1|DV522980
EST:     GCATTCTTGCCTGCGACCACAGCTTCGAGAGGCCATTCCAGTAACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAA
genomic: GCATTCTTGCCTGCGACCACAGCT-CGAGAGGCCATTC-AGTA-CTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAA
EST: gi|31349858|gb|CD434215.1|CD434215
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|14243411|gb|BG841076.2|BG841076
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|60348523|gb|DN215496.1|DN215496
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|29129886|gb|CB380590.1|CB380590
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|31356747|gb|CD441104.1|CD441104
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|60356641|gb|DN223614.1|DN223614
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|37375185|gb|CF624015.1|CF624015
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|60358335|gb|DN225308.1|DN225308
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
EST: gi|213191211|gb|FM191435.1|FM191435
EST:     GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT                         GGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG
genomic: GATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 339

ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAGCAACTATTTATCTGGGCGTCTTGGAATGAGTGTGATTTTAATAAGTCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 283

ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAGCAACTATTTATCTGGGCGTCTTGGAATGAGTGTGATTTTAATAAGTCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 367

ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAGCAACTATTTATCTGGGCGTCTTGGAATGAGTGTGATTTTAATAAGTCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 344

ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcag ... ctgatcgcagGGATCTGTATGCGCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGGAAGCAACTATTTATCTGGGCGTCTTGGAATGAGTGTGATTTTAATAAGTCAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATgtaagctcagcttgacactgaacctttcgctaatccgttacaaaagtgcattctgtaattatttctccgttcggttgtggtgattgttgagtatgtgactcttagtaacacatacttattgatctgatcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG