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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTCTTTAATCTCCTTCCAAATTTGAACGTAAATGAGCTAATTAAAGCCTTTGCAGgtaatcttgcatctttcttctgatttaacataacagaccttatcttctcagaatccttattttgcagcagccttatgtttcctttctttggtgcag

Basic information

species Zea mays
transcript GRMZM2G061745_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os04g56646.1 (Oryza sativa), 5'ss of exon 8
GATGTCTTTAATCTCCTTCCAAATTTGAACGTAAATGAGCTAATTAAAGCCTTTGCAGgtaatcttgcatctttcttctgatttaacataacagaccttatcttctca----gaatccttattttgcagcagccttatgtttcctttctttggtgcag
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GATGTGTTTAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGgtaataacacatgttctcaccaatttactataattgagctgaacctgtcgtctgggtttcttatcttaaaatggttcgatgctaatgttctttcctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211382592|gb|FK956034.1|FK956034
EST:     AATCTCCTTCCAAATCTGAACGTAATTGAGCTAATTTAAAGCCTTTGCAG                         TGAAAACMAACGACATGATGTTGGTGATATA
genomic: AATCTCCTTCCAAATTTGAACGTAAATGAGCTAATT-AAAGCCTTTGCAGgtaatcttgc ... tttggtgcagTGAAAACAAACGACATGATGTTGGTGATATA
EST: gi|211382593|gb|FK956035.1|FK956035
EST:     TAATCTCCTTCCAAATCTGAACGTAAATGAGCTAATTAAAGCCTTTGCAG                         TGAAAACTAACGACATGATGTTGGTGATATACCTGTNTTCTCTGATCCGGA
genomic: TAATCTCCTTCCAAATTTGAACGTAAATGAGCTAATTAAAGCCTTTGCAGgtaatcttgc ... tttggtgcagTGAAAACAAACGACATGATGTTGGTGATATACCTGTCTTCTCTGATCCGGA
EST: gi|211382591|gb|FK956033.1|FK956033
EST:     TAATCTCCTTCCAAATCTGAACGTAAATGAGCTAATTAAAGCCTTTGCAG                         TGAAAACAAACGACATGATGTTGGTGATATACCTGTCTTCTCTGATCCGGG
genomic: TAATCTCCTTCCAAATTTGAACGTAAATGAGCTAATTAAAGCCTTTGCAGgtaatcttgc ... tttggtgcagTGAAAACAAACGACATGATGTTGGTGATATACCTGTCTTCTCTGATCCGG-
EST: gi|211385218|gb|FK956039.1|FK956039
EST:     TAATCTCCTTCCAAATCTGAACGTAAATGAGCTAATTAAAGCCTTTGCAG                         TGAAAACAAACGACATGATGTYGGTGATATACCTGTCTTCTCTGAACCGGA
genomic: TAATCTCCTTCCAAATTTGAACGTAAATGAGCTAATTAAAGCCTTTGCAGgtaatcttgc ... tttggtgcagTGAAAACAAACGACATGATGTTGGTGATATACCTGTCTTCTCTGATCCGGA
EST: gi|30705314|gb|CD058743.1|CD058743
EST:     TAATCTCCTTCCAAATTTGAACGTAAATGAGCTAATTAAAGCCTTTGCAG                         TGAAAACAAACGACATGATGTTGGTGATATACCTGTCTTCTCTGATCCGGA
genomic: TAATCTCCTTCCAAATTTGAACGTAAATGAGCTAATTAAAGCCTTTGCAGgtaatcttgc ... tttggtgcagTGAAAACAAACGACATGATGTTGGTGATATACCTGTCTTCTCTGATCCGGA
EST: gi|211385220|gb|FK956041.1|FK956041
EST:     TAATCTCCTTCCAAATCTGAACGTAAATGAGCTAATTAAAGCCTTTGCAG                         TGAAAACAAACGACATGAT
genomic: TAATCTCCTTCCAAATTTGAACGTAAATGAGCTAATTAAAGCCTTTGCAGgtaatcttgc ... tttggtgcagTGAAAACAAACGACATGAT
EST: gi|211385221|gb|FK956042.1|FK956042
EST:     TAATCTCCTTCCAAATCTGAACGTAAATGAGCTAATTAAAGCCTTTGCAG                         TGAAAACAAACGACATGATGTTGGTGATATACCTGTCTTCTCTGATCCGGA
genomic: TAATCTCCTTCCAAATTTGAACGTAAATGAGCTAATTAAAGCCTTTGCAGgtaatcttgc ... tttggtgcagTGAAAACAAACGACATGATGTTGGTGATATACCTGTCTTCTCTGATCCGGA
EST: gi|211385224|gb|FK956045.1|FK956045
EST:     TAATCTCCTTCCAAATCTGAACGTAAATGAGCTAATTAAAGCCTTTGCAG                         TGAAAACAAACGACATGATGT
genomic: TAATCTCCTTCCAAATTTGAACGTAAATGAGCTAATTAAAGCCTTTGCAGgtaatcttgc ... tttggtgcagTGAAAACAAACGACATGATGT