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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTCCTCCTCTTTGTGCTGAGTTACGCAACATGGTTATGCAGCCAATGATTTTGCCTATGGTTCTAACAATAGCAGAATCTCAGgttatttctgtggtttctcatttgtatccactttaatgaatgaatagagtttctatgcattcaaagaacattatggaatcccgagtatttattcttagcg...

Basic information

species Zea mays
transcript GRMZM2G061681_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061681_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g42950.2 (Oryza sativa), 5'ss of exon 8
GTTCTTCCTCCTCTTTGTGCTGAGTTACGCAACATGGTTATGCAGCCAATGATTTTGCCTATGGTTCTAACAATAGCAGAATCTCAGgttatttctgtggtttctcatttgtatccactt--taatgaatgaatagagtttctatgcattcaaagaacattatggaatcccgagtatttattcttagcg
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| || |   | || | | |    || |   ||  |||  | |  ||  | | | |      |  ||  | | ||  |||        | | ||| ||| | 
GTTCTTCCACCTCTCTGTGCTGAGTTACGCAACATGGTCATGCAGCCAATGATTTTGCCCATGGTTCTAACAATAGCGGAATCTCAGgtcatgttccttgtgttttacgaatacctttttcttaaatattttatgaattatattctttgttcaatgatagta-agaacttatctcactgattgttaac-

upper sequence: GRMZM2G061681_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 8
GTTCTTCCTCCTCTTTGTGCTGAGTTACGCAACATGGTTATGCAGCCAATGATTTTGCCTATGGTTCTAACAATAGCAGAATCTCAGgttatttctgtggtttctcatttgtatccactttaatgaatgaatagagtttctatgcattcaaagaacattatgg--aatcccgagtatttattcttagcg---
|| ||||| || |||||||| ||| |  | ||  |||| || |||||||||||||| || ||||||||||| || ||||| ||||||||     ||    | |||   || | | |||||  ||  |  |    | ||  |   | | |  |   |||| |    ||     | ||||    |  ||     
GTCCTTCCACCACTTTGTGCAGAGCTTAGGAATGTGGTGATACAGCCAATGATTTTACCAATGGTTCTAACCATTGCAGAGTCTCAGgt----actaatatctctttcttttcttcacttccatagaatacctaaattagtgctcgtgctgacggcattgtaattaaaaatcaatatt-gcaccaagaaata

upper sequence: GRMZM2G061681_T02 (Zea mays), 5'ss of exon 8
lower sequence: AT1G22870.1 (Arabidopsis thaliana), 5'ss of exon 8
GTTCTTCCTCCTCTTTGTGCTGAGTTACGCAACATGGTTATGCAGCCAATGATTTTGCCTATGGTTCTAACAATAGCAGAATCTCAGgttatttctgtggtttctcatttgtatccactttaatgaatgaatagagtttctatgcat-tcaaagaacattatggaatcccga--gtatttattcttagcg
|| ||||||||||||||||||||  |  | ||  |||||||||| ||| ||||| | || ||||||||||| |||||||| ||||||||  ||| | |  |  || |  |   | || ||     |    || |  ||    || |  |  |   | |  |  || ||   |    |||| || ||    
GTGCTTCCTCCTCTTTGTGCTGAACTTAGGAATTTGGTTATGCAACCAGTGATTCTTCCCATGGTTCTAACTATAGCAGAGTCTCAGgtgctttttctaat--cttaagtacttacatttcgtcaatcagatcgtattctattggaggtttacagataccagtgattctatataaaatttgtttttctt-