1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTGTGGAGTTCTTGAGAAATGCTCCTGAAGGGACATATGATGCTATCATTGTTGATTCGTCAGATCCAATAGgtgagcttatgctgccatggattgtctttcttgaacacagtaccatggaaaggctttgctatgtctttgttgtgtatatcagttctgtgcattttggttt...
species | Zea mays |
transcript | GRMZM2G060896_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCCTGAGGGGACATATGATGCTATCATTGTTGATTCGTCAGATCCAATAG GGCCTGCTCAGGAACTTGTAGAGAAGCCNNNNNNNGATACGATTGCTAGAGEST: gi|5819350|gb|AI987556.1|AI987556
genomic: TCCTGAAGGGACATATGATGCTATCATTGTTGATTCGTCAGATCCAATAGgtgagcttat ... gcatttgcagGGCCTGCTCAGGAACTTGTAGAGAAGCCTTTTTTTGATACAATTGCTAGAG
EST: CGTCAGATCCAATAG GGCCTGCTCAGGAACTTGTAGAGAAGCCNNNNNNNGATACGATTGCTAGAGEST: gi|45567480|gb|CK985592.1|CK985592
genomic: CGTCAGATCCAATAGgtgagcttat ... gcatttgcagGGCCTGCTCAGGAACTTGTAGAGAAGCCTTTTTTTGATACAATTGCTAGAG
EST: TCTTGAAGGGACATATGATGCTATCATTGTTGATTCGTCAGATCCAATAG GGCCTGCTCAGGAACTTGTAGAGAAGCCNNNNNNNGATACAATTGCTAGAGEST: gi|5847113|gb|AW000192.1|AW000192
genomic: TCCTGAAGGGACATATGATGCTATCATTGTTGATTCGTCAGATCCAATAGgtgagcttat ... gcatttgcagGGCCTGCTCAGGAACTTGTAGAGAAGCCTTTTTTTGATACAATTGCTAGAG
EST: AGATCCAATAG GGCCTGCTCAGGAACTTGTAGAGAAGCCNNNNNNNGATACGATTGCTAGAG
genomic: AGATCCAATAGgtgagcttat ... gcatttgcagGGCCTGCTCAGGAACTTGTAGAGAAGCCTTTTTTTGATACAATTGCTAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTGGAGTTCTTGAGAAATGCTCCTGAAGGGACATATGATGCTATCATTGTTGATTCGTCAGATCCAATAGgtgagcttatgctgccatggattgtctttcttgaacacagtaccatggaaaggctttgctatgtctttgttgtgtatatcagttctgtgcattttggttt
- - - - - - - - - - - - CTGAAG