Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAGAGGTTTCGAGTTTGCTAAAGCGGTTACTCTTGTTGCTGAGCCGTTCACATTGGATAATGGCCTTCTCACCCCAACATTCAAGgtaaagctcatttgctctgttagaggcgaccccgataccaaatcactgacctgctgacactccacctcaacgcttctgtacctgtag

Basic information

species Zea mays
transcript GRMZM2G059381_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G059381_T03 (Zea mays), 5'ss of exon 9
lower sequence: AT5G27600.1 (Arabidopsis thaliana), 5'ss of exon 22
CTGAGAGGTTTCGAGTTTGCTAAAGCGGTTACTCTTGTTGCTGAGCCGTTCACATTGGATAATGGCCTTCTCACCCCAACATTCAAGgtaaagctcatttgctctgttagaggcgaccccgataccaaatcactg--acctgct---gacactccacctcaacgcttctgtacctgtag------
 ||||||| || |||||||| || || || ||| | ||  | || || ||||| ||||| ||||| |||||||| ||||||||||||||||  || |    |  |||   ||  ||  |||  |  ||||   ||  || | |    ||  ||| |  |||    |  |  | || |        
TTGAGAGGGTTTGAGTTTGCAAAGGCTGTGACTTTGGTGCCAGAACCATTCACCTTGGAGAATGGACTTCTCACACCAACATTCAAGgtaa--ctaaacaacaatgt-gaagttgaaaccgcaatgaaatttttgttacttacctcggaatctctaattcatgtgtggtaaaacttttctaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60395514|gb|DN228384.1|DN228384
EST:     TTGCTGAGCCATTCTCATTGGACAATGGCCTTCTCACCCCAACATTCAAG                         GTCAAGAGGCCGCAAGCCAAAGCATACTTTGCAAAAGAAATCTCAGACATG
genomic: TTGCTGAGCCGTTCACATTGGATAATGGCCTTCTCACCCCAACATTCAAGgtaaagctca ... gtacctgtagGTCAAGAGGCCGCAAGCCAAAGCATACTTTGCAAAAGAGATCTCAGACATG
EST: gi|60399365|gb|DN232179.1|DN232179
EST:     TTGCTGAGCCGTTCACATTGGATAATGGCCTTCTCACCCCAACATTCAAG                         GTCAAGAGGCCGCAAGCCAAAGCATACTTTGCAAAAGAGATCTCAGACATG
genomic: TTGCTGAGCCGTTCACATTGGATAATGGCCTTCTCACCCCAACATTCAAGgtaaagctca ... gtacctgtagGTCAAGAGGCCGCAAGCCAAAGCATACTTTGCAAAAGAGATCTCAGACATG