1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GACGCCAGATATGTCAGCCATGCATCATGACTCCTCACATGACCTCAAAACTCTTGGAGCTAAACTGAAGGACATAGTCGGGgtacggcttgcctgtgccaaattggcttgttgttcataaatagtcagtcagtgtgactctcggtcccttacggcatatacatttgttctcatgttcag
species | Zea mays |
transcript | GRMZM2G058745_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CCTCACATGACCTCAAAACTCTTGGAGCTAAACTGAAGGACATAGTCGGG GTCGCGGTCACTTCCCTGGAAGTAAGGTACATCACTCGTCACATCTGTGACEST: gi|116825360|gb|EC869084.1|EC869084
genomic: CCTCACATGACCTCAAAACTCTTGGAGCTAAACTGAAGGACATAGTCGGGgtacggcttg ... tcatgttcagGTCGCGGACACTTCCCTGGAAGTAAGGTACATCACTCGTCACATCTGTGAC
EST: CCTCACATGACCTCAAAACTCTTGGAGCTAAACTGAAGGACATAGTCGGG GTCGCGGACACTTCCCTGGAAGTAAGGTACATCACTCGTCACATCTGTGACEST: gi|32943726|gb|CF048545.1|CF048545
genomic: CCTCACATGACCTCAAAACTCTTGGAGCTAAACTGAAGGACATAGTCGGGgtacggcttg ... tcatgttcagGTCGCGGACACTTCCCTGGAAGTAAGGTACATCACTCGTCACATCTGTGAC
EST: CCTCACATGACCTCAAAACTCTTGGAGCTAAACTGAAGGACATAGTCGGG GTCGCGGACACTTCCCTGGAAGTAAGGTACATCACTCGTCACATCTGTGAC
genomic: CCTCACATGACCTCAAAACTCTTGGAGCTAAACTGAAGGACATAGTCGGGgtacggcttg ... tcatgttcagGTCGCGGACACTTCCCTGGAAGTAAGGTACATCACTCGTCACATCTGTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGCCAGATATGTCAGCCATGCATCATGACTCCTCACATGACCTCAAAACTCTTGGAGCTAAACTGAAGGACATAGTCGGGgtacggcttgcctgtgccaaattggcttgttgttcataaatagtcagtcagtgtgactctcggtcccttacggcatatacatttgttctcatgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG