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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGCACAGATTGCTGGATGCAAAACTATTGTTCTTGCCACACCACCTAGCCGTGATGGTAGCATATGCAAGgtacacttgatatggaactgcaccgggattcttttttaaacaattggttgatggagcattatatacttgtttcctgcag

Basic information

species Zea mays
transcript GRMZM2G058584_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G058584_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g13190.1 (Oryza sativa), 5'ss of exon 6
CCTGCACAGATTGCTGGATGCAAAACTATTGTTCTTGCCACACCACCTAGCCGTGATGGTAGCATATGCAAGgtaca-cttgatatggaactgcaccgggattcttttttaaacaattggt-tgatggagcattatatacttgttt-cctgcag--------------------------
||||||||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||||||| ||||||||  || ||  |   | | |  |    | ||| | | | | ||| | || | | |  |   ||  |   ||   || |                           
CCTGCACAGATTGCTGGTTGCAAAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAGgtacaattttattggatgcaggattgctgctatttctgaga-agttgatatgtttgtgtttctaatgttgaattatttggaatcggttgttgctcttgtcctccgcag

upper sequence: GRMZM2G058584_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA08G08630.1 (Glycine max), 5'ss of exon 5
CCTGCACAGATTGCTGGATGCAAAACTATTGTTCTTGCCACACCACCTAGCCGTGATGGTAGCATATGCAAGgtacacttgatatggaactgcaccgggattcttttttaaacaattggttgatggagcattatatacttgtttcctgcag
|||||||||||||||||||| ||||||||||| ||||| || || ||    |  |||||||  ||||||||||||| | |  |||   | || |     |   | ||| | || || |  |  |     |  | |   || ||| ||||||
CCTGCACAGATTGCTGGATGTAAAACTATTGTCCTTGCAACTCCTCCAGCTCAGGATGGTACTATATGCAAGgtactcatc-tat---attgtatgaaaa---tatttgagaccatagcatcttttctgacca-acgttt-tttgctgcag

upper sequence: GRMZM2G058584_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA15G13910.2 (Glycine max), 5'ss of exon 6
CCTGCACAGATTGCTGGATGCAAAACTATTGTTCTTGCCACACCACCTAGCCGTGATGGTAGCATATGCAAGgtacacttgatatggaactgcaccgggattcttttttaaacaattggttgatggagcattatatacttgtttcctgcag
|||||||| ||||| ||||| ||||||||||||||||| |  || || |  || ||||| |  | ||||||||||   || || |     || |     ||| |  |    |  ||  |||| |   |   |    | |  ||||||||||
CCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAGgta---tttatctatt-ttgtatgaaaattatagtc---atgat--gttgttcttgttctgaccaatgctttcctgcag

upper sequence: GRMZM2G058584_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA09G02960.1 (Glycine max), 5'ss of exon 6
CCTGCACAGATTGCTGGATGCAAAACTATTGTTCTTGCCACACCACCTAGCCGTGATGGTAGCATATGCAAGgtacacttgatatggaactgcaccgggattcttttttaaacaattggttgatggagcattatatacttgtttcctgcag
|||||||| ||||| ||||| ||||||||||||||||| |  || || |  || ||||| |  | ||||||||||   || || |     ||       ||| |  |    |  ||  |||| |   |   |    | |  ||||||||||
CCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAGgta---tttatctatttttgtttgaaaattatagtc---atgat--gttgttcttgttctgagcaatgttttcctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89758985|gb|DY687956.1|DY687956
EST:     AAACTATTGTTCTTGCCACACCACCTAGCCGTGATGGTAGCATATGCAAG                         GAGGTTCTTTACTGTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCT
genomic: AAACTATTGTTCTTGCCACACCACCTAGCCGTGATGGTAGCATATGCAAGgtacacttga ... tttcctgcagGAGGTTCTTTACTGTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCT
EST: gi|8516559|gb|BE123284.1|BE123284
EST:     ATTGTTCTTGCCACACCACCTA-CCGTGATGGCAGCATATGCAAG                         GAGGTTCTTTACTGTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCT
genomic: ATTGTTCTTGCCACACCACCTAGCCGTGATGGTAGCATATGCAAGgtacacttga ... tttcctgcagGAGGTTCTTTACTGTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCT
EST: gi|21331772|gb|BQ487153.1|BQ487153
EST:     AACTA-TGTTCTTGCCACACCACCTAGCCG-GATGGCAGCATATGCAAG                         GAGGTTCTTTACTGTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCT
genomic: AACTATTGTTCTTGCCACACCACCTAGCCGTGATGGTAGCATATGCAAGgtacacttga ... tttcctgcagGAGGTTCTTTACTGTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCT
EST: gi|23357617|gb|BU645266.1|BU645266
EST:     AAACTATTGTTCTTGCCACACCACCTAGCCGTGATGGCAGCATATGCAAG                         GAGGTTCTTTACTGTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCT
genomic: AAACTATTGTTCTTGCCACACCACCTAGCCGTGATGGTAGCATATGCAAGgtacacttga ... tttcctgcagGAGGTTCTTTACTGTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCT
EST: gi|38688105|gb|CK145136.1|CK145136
EST:     AAACTATTGTTCTTGCCACACCACCTAGCCGTGATGGTAGCATATGCAAG                         GAGGTTCTTTACTGTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCT
genomic: AAACTATTGTTCTTGCCACACCACCTAGCCGTGATGGTAGCATATGCAAGgtacacttga ... tttcctgcagGAGGTTCTTTACTGTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCT
EST: gi|76012899|gb|DT940069.1|DT940069
EST:     AAACTATTGTTCTTGCCACACCACCTAGCCGTGATGGTAGCATATGCAAG                         GAGGTTCTTTACTGTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCT
genomic: AAACTATTGTTCTTGCCACACCACCTAGCCGTGATGGTAGCATATGCAAGgtacacttga ... tttcctgcagGAGGTTCTTTACTGTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCT
EST: gi|211215840|gb|FL096753.1|FL096753
EST:     AAACTATTGTTCTTGCCACACCACCTAGCCGTGATGGCAGCATATGCAAG                         GAGGTTCTTTACTGTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCT
genomic: AAACTATTGTTCTTGCCACACCACCTAGCCGTGATGGTAGCATATGCAAGgtacacttga ... tttcctgcagGAGGTTCTTTACTGTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCT
EST: gi|211320051|gb|FL096754.1|FL096754
EST:     AAACTATTGTTCTTGCCACACCACCTAGCCGTGATGGCAGCATATGCAAG                         GAGGTTCTTTACTGTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCT
genomic: AAACTATTGTTCTTGCCACACCACCTAGCCGTGATGGTAGCATATGCAAGgtacacttga ... tttcctgcagGAGGTTCTTTACTGTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCT
EST: gi|38687960|gb|CK144991.1|CK144991
EST:     AAACTATTGTTCTTGCCACACCACCTAGCCGTGATGGTAGCATATGCAAG                         GAGGTTCTTTACTGTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCT
genomic: AAACTATTGTTCTTGCCACACCACCTAGCCGTGATGGTAGCATATGCAAGgtacacttga ... tttcctgcagGAGGTTCTTTACTGTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCT