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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTCCTCTACTGGTGGATTTTATGCCATCAACAGAAGAGGGCAGGTTTTACATGCCACGGTTAATGATGCAACTGTTGTACCATTTGTTAGCGGCCAGgtatgatcttttacacttctgggtctactttgctgatctgcttgttaaataattctttttaaacacaattttggtatgcag

Basic information

species Zea mays
transcript GRMZM2G057576_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 9
ATCTTCCTCTACTGGTGGATTTTATGCCATCAACAGAAGAGGGCAGGTTTTACATGCCACGGTTAATGATGCAACTGTTGTACCATTTGTTAGCGGCCAGgtatgatcttttacacttctgggtctactttgctgatctgcttgttaaataattctttttaaacacaattt-tggtatgcag
 |||||  | | |||||| |||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||  |||| || ||||| ||| | || ||||| |||  | | |||       ||||| ||| || |||||| ||  | ||  ||||||| |||| ||| |  |||||||
GTCTTCTGCAAGTGGTGGTTTTTATGCCATCAATAGGAGAGGACAGGTTTTACATGCCACAGTTAATGATGCAACCATTGTGCCTTTTGTCAGCAGTCAAgtatgttctcctgctctt---aaattacttggcttatgtgcttgcta--ttatcgtttttaa-cacattttgttttatgcag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 9
ATCTTCCTCTACTGGTGGATTTTATGCCATCAACAGAAGAGGGCAGGTTTTACATGCCACGGTTAATGATGCAACTGTTGTACCATTTGTTAGCGGCCAGgtatgatcttttacacttctgggtctactttgctgatctgcttgttaaataattctttttaaacacaattt-tggtatgcag
 |||||  | | |||||| |||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||  |||| || ||||| ||| | || ||||| |||  | | |||       ||||| ||| || |||||| ||  | ||  ||||||| |||| ||| |  |||||||
GTCTTCTGCAAGTGGTGGTTTTTATGCCATCAATAGGAGAGGACAGGTTTTACATGCCACAGTTAATGATGCAACCATTGTGCCTTTTGTCAGCAGTCAAgtatgttctcctgccctt---aaattacttggcttatgtgcttgcta--ttatcgtttttaa-cacattttgttttatgcag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 9
ATCTTCCTCTACTGGTGGATTTTATGCCATCAACAGAAGAGGGCAGGTTTTACATGCCACGGTTAATGATGCAACTGTTGTACCATTTGTTAGCGGCCAGgtatgatcttttacacttctgggtctactttgctg---atctgcttgttaaataattctttt-taaacacaattttggtat-gcag
| || | |||   || || ||||||||||||||||| ||||| |||||||||   || || ||||||||   |||  ||||    ||||| || ||||| ||||| | | | ||  |  |    ||  |||| ||   |   |  | | ||||     ||||  |||    |||| | |||  |||
AGCTACATCTGTGGGAGGCTTTTATGCCATCAACAGGAGAGGCCAGGTTTTATTGGCTACTGTTAATGAACAAACCATTGTGAATTTTGTCAGTGGCCAAgtatg-tttctgaccatgttataacttttttgttgtaaagtggggtatgaaatgccatttttacaaatttcatttggttatcacag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 9
ATCTTCCTCTACTGGTGGATTTTATGCCATCAACAGAAGAGGGCAGGTTTTACATGCCACGGTTAATGATGCAACTGTTGTACCATTTGTTAGCGGCCAGgtatgatcttttacacttctgggtctactttgctgatctgcttgttaaataat-----tctttttaaacacaattt--tggtatgcag
| ||||||| | ||| || ||||||||||| || ||  ||||||||||||| | ||| || || ||||| |||||  |||| || |||||||| |||||||||  || | ||   | ||      | ||||| | |   |      ||| ||      | |||| |||    ||||  || | |||||
AGCTTCCTCAATTGGAGGTTTTTATGCCATTAATAGGCGAGGGCAGGTTTTGCTTGCTACTGTAAATGAAGCAACAATTGTGCCTTTTGTTAGTGGCCAGgtacaatttgtttttcctcct--ctttctttgattactggaggaaaaaaaaaactttgttttttaaaatgttatttgatgttttgcag