Sequence
atgc intronic sequence ATGC exonic sequenceAATGTTATTCATGGTGATATCAAACCAGACAATCTCTTGGTTACCAGTGCCGGCAATGTGAAGATTGGGGATTTCAGTGTTAGCCAGGTTTTTGAGgtggtttctgtactcctgtaactcatataatttagtgtgtttttttcttttgttatggaaatattgttttccagtcaaatggatgcacccatgaaaggga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G057084_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g50330.1 (Oryza sativa), 5'ss of exon 8
AATGTTATTCATGGTGATATCAAACCAGACAATCTCTTGGTTACCAGTGCCGGCAATGTGAAGATTGGGGATTTCAGTGTTAGCCAGGTTTTTGAGgtggtttctgtactcctgtaactcatataatttagtg-----tgtttttttcttttgttatggaaatattgttttccagtcaaatggatgcacccatgaaaggga
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AATATTATTCATGGTGATATCAAACCAGACAATTTGTTGGTCACAAGCACTGGCAGTGTGAAGATAGGGGATTTCAGTGTTAGTCAGATTTTTGAGgtgggcctt-ta-tcctctaacctctgtattgtagtaatgaatgctattttcctt-gtcatggcataaagggctttcagttgaatggatcc--ccagaaaattgt
upper sequence: GRMZM2G057084_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA11G20690.1 (Glycine max), 5'ss of exon 8
AATGTTATTCATGGTGATATCAAACCAGACAATCTCTTGGTTACCAGTGCCGGCAATGTGAAGATTGGGGATTTCAGTGTTAGCCAGGTTTTTGAGgtggtttctgtactcctgtaactcatataatttagtgtgtttttttcttttgttatggaaatattgttttccagtcaaatggatgcacccatgaaaggga----
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AATATTGTTCATCTGGATATTAAGCCAGATAATCTGTTGATTACTCGTCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGgtaatgtaattactg----agcccaaatgaaaatttgattacttaaaatgaatatcaaagctcatagtctacataggcattagtgtttcttcaactgcaacatg
upper sequence: GRMZM2G057084_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA12G07340.1 (Glycine max), 5'ss of exon 9
AATGTTATTCATGGTGATATCAAACCAGACAATCTCTTGGTTACCAGTGCCGGCAATGTGAAGATTGGGGATTTCAGTGTTAGCCAGGTTTTTGAGgtggtttctgtactcctgtaactcatataatttagtgtgtttttttcttttgttatggaaatattgttttccagt-caaatggatgc-acccatgaaaggga-----
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AATATAGTACATCTGGATATTAAGCCAGATAATCTGTTGATTACTTGTCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGgtaatgta---actactg-agcccaaatga--aaatttgagtacttgaaatga-ataatatcagagcccgtgagtgtacatgggcattagtcattagtttttcttca
upper sequence: GRMZM2G057084_T01 (Zea mays), 5'ss of exon 8
lower sequence: AT3G45240.3 (Arabidopsis thaliana), 5'ss of exon 9
AATGTTATTCATGGTGATATCAAACCAGACAATCTCTTGGTTACCAGTGCCGGCAATGTGAAGATTGGGGATTTCAGTGTTAGCCAGGTTTTTGAGgtggtttctgtactcctgtaactcatataatttagtgtgtttttttcttttgttatggaaatattgttttccagtcaaatggatgcacccatgaaaggga
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AATGTAATTCATGGTGACATCAAACCTGACAATTTACTGGTTACTAGTACCGGGAGAGTGAAAATAGGAGATTTCAGTGTCAGCCAAgtattcaaagtactgatgataccatttcttttcttct--ttttcttctccgttaatctctgtaatgtgtaatttgatctgctaaaacatg-atacatttgatgaag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60349018|gb|DN215991.1|DN215991EST: GTGCCGGCAATGTGAAGATTGGGGATTTCAGTGTTAGCCAGGTTTTTGAG GATGATGATGATATGCTTTGGAGATCTCCTGGCACTCCTGTTTT
genomic: GTGCCGGCAATGTGAAGATTGGGGATTTCAGTGTTAGCCAGGTTTTTGAGgtggtttctg ... tgctacatagGATGATGATGATATGCTTTGGAGATCTCCTGGCACTCCTGTTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATGTTATTCATGGTGATATCAAACCAGACAATCTCTTGGTTACCAGTGCCGGCAATGTGAAGATTGGGGATTTCAGTGTTAGCCAGGTTTTTGAGgtggtttctgtactcctgtaactcatataatttagtgtgtttttttcttttgttatggaaatattgttttccagtcaaatggatgcacccatgaaaggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA