1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGACAGGCTGAAAGATGTAAAAGTTGCTGACGCTTTAAAGCATCCAAACTGGAATATGGGAAGGAAGATCACAGTAGATTCTGCTACTTTATTCAACAAGgtgtcatagagctccatcttttttgaaaaaaaaatctttaatccatatttattattaaacactaaattgacgacttggtcttgtag
species | Zea mays |
transcript | GRMZM2G056975_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATGGGAAGNAAGATCACAGTAGATTCTGCTACTTTATTCAACAAG GGTTTAGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATATGATGACEST: gi|14206809|gb|BG840487.1|BG840487
genomic: ATGGGAAGGAAGATCACAGTAGATTCTGCTACTTTATTCAACAAGgtgtcataga ... ggtcttgtagGGTTTAGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATATGATGAC
EST: GGAATATGGGAAGGAAGATCACAGTAGATTCTGCTACTTTATTCAACAAG GGTTTAGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATATGATGACEST: gi|84970217|gb|DW468567.1|DW468567
genomic: GGAATATGGGAAGGAAGATCACAGTAGATTCTGCTACTTTATTCAACAAGgtgtcataga ... ggtcttgtagGGTTTAGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATATGATGAC
EST: GGAATATGGGAAGGAAGATCACAGTAGATTCTGCTACTTTATTCAACAAG GGTTTAGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATATGATGACEST: gi|71445034|gb|DR826084.1|DR826084
genomic: GGAATATGGGAAGGAAGATCACAGTAGATTCTGCTACTTTATTCAACAAGgtgtcataga ... ggtcttgtagGGTTTAGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATATGATGAC
EST: AAGGAAGATCACAGTAGATTCTGCTACTTTATTCAACAAG GGTTTAGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATATGATGACEST: gi|86474441|gb|DY240811.1|DY240811
genomic: AAGGAAGATCACAGTAGATTCTGCTACTTTATTCAACAAGgtgtcataga ... ggtcttgtagGGTTTAGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATATGATGAC
EST: GGAATATGGGAAGGAAGATCACAGTAGATTCTGCTACTTTATTCAACAAG GGTTTAGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATATGATGACEST: gi|211496438|gb|FL049443.1|FL049443
genomic: GGAATATGGGAAGGAAGATCACAGTAGATTCTGCTACTTTATTCAACAAGgtgtcataga ... ggtcttgtagGGTTTAGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATATGATGAC
EST: GGAATATGGGAAGGAAGATCACAGTAGATTCTGCTACTTTATTCAACAAG GGTTTAGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATATGAEST: gi|32798103|gb|CD950339.1|CD950339
genomic: GGAATATGGGAAGGAAGATCACAGTAGATTCTGCTACTTTATTCAACAAGgtgtcataga ... ggtcttgtagGGTTTAGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATATGA
EST: GGAATATGGGAAGGAAGATCACAGTAGATTCCGCTACTTTATTCAACAAG GGTTTAGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATATGATGAC
genomic: GGAATATGGGAAGGAAGATCACAGTAGATTCTGCTACTTTATTCAACAAGgtgtcataga ... ggtcttgtagGGTTTAGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATATGATGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACAGGCTGAAAGATGTAAAAGTTGCTGACGCTTTAAAGCATCCAAACTGGAATATGGGAAGGAAGATCACAGTAGATTCTGCTACTTTATTCAACAAGgtgtcatagagctccatcttttttgaaaaaaaaatctttaatccatatttattattaaacactaaattgacgacttggtcttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA