1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TCCTGCTGTGGTTAGCAAATTGCACAAACTTATCAACTGTAATGGTGGTGTAACATATATACATTGTACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCAgtaggtttacatgccacccccccctaatttttgtttcccaagacaacttattgtttcacagattccttatgtttgtctagagatccttttgcttcagtag...
species | Zea mays |
transcript | GRMZM2G052546_T07 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TAACATATATACATTGTACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCA TTGGCTTATATGTTCTGGATTCTTGGGTACAGTCTCAATGAAGGACATCGGEST: gi|148970824|gb|EE021591.2|EE021591
genomic: TAACATATATACATTGTACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCAgtaggtttac ... aaaatttcagTTGGCTTATATGTTCTGGATTCTTGGGTACAGTCTCAATGAAGGACATCGG
EST: TAACATATATACATTGTACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCA TTGGCTTATATGTTCTGGATTCTTGGGTACAGTCTCAATGAAGGACATCGGEST: gi|148967268|gb|EE018472.2|EE018472
genomic: TAACATATATACATTGTACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCAgtaggtttac ... aaaatttcagTTGGCTTATATGTTCTGGATTCTTGGGTACAGTCTCAATGAAGGACATCGG
EST: TAACATATATACATTGTACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCA TTGGCTTATATGTTCTGGATTCTTGGGTACAGTCTCAATGAAGGACATCGGEST: gi|76290045|gb|DV029613.1|DV029613
genomic: TAACATATATACATTGTACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCAgtaggtttac ... aaaatttcagTTGGCTTATATGTTCTGGATTCTTGGGTACAGTCTCAATGAAGGACATCGG
EST: TAACATATATACATTGTACTGCTGGACTTGNAAGAGCTCCTGCTGTTGCA TTGGCTTATATGTTCTGGATTCTTGGGTACAGTCTCAATGAAGGACATCGGEST: gi|21621474|gb|BQ619480.1|BQ619480
genomic: TAACATATATACATTGTACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCAgtaggtttac ... aaaatttcagTTGGCTTATATGTTCTGGATTCTTGGGTACAGTCTCAATGAAGGACATCGG
EST: TAACATATATACATTGTACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCA TTGGCTTATATNGT-CTGGATTNCT-GGGTACAGTCTCAATGAAGGACATCEST: gi|71435430|gb|DR816480.1|DR816480
genomic: TAACATATATACATTGTACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCAgtaggtttac ... aaaatttcagTTGGCTTATAT-GTTCTGGATT-CTTGGGTACAGTCTCAATGAAGGACATC
EST: TAACATATATACATTGTACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCA TTGGCTTATATGTTCTGGATTCTTGGGTACAGTCTCAATGAAGGACATCGGEST: gi|67023551|gb|CO452300.1|CO452300
genomic: TAACATATATACATTGTACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCAgtaggtttac ... aaaatttcagTTGGCTTATATGTTCTGGATTCTTGGGTACAGTCTCAATGAAGGACATCGG
EST: TAACATATATACATTGTACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCA TTGGCTTATATGTTCTGGATTCTTGGGTACAGTCTCAATGAAGGACATCGGEST: gi|74234762|gb|DT642676.1|DT642676
genomic: TAACATATATACATTGTACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCAgtaggtttac ... aaaatttcagTTGGCTTATATGTTCTGGATTCTTGGGTACAGTCTCAATGAAGGACATCGG
EST: TAACATATATACATTGTACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCA TTGGCTTATATGTTCTGGATTCTTGGGTACAGTCTCAATGAAGGACATCGGEST: gi|148934585|gb|EC878634.2|EC878634
genomic: TAACATATATACATTGTACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCAgtaggtttac ... aaaatttcagTTGGCTTATATGTTCTGGATTCTTGGGTACAGTCTCAATGAAGGACATCGG
EST: TAACATATATACATTGTACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCA TTGGCTTATATGTTCT
genomic: TAACATATATACATTGTACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCAgtaggtttac ... aaaatttcagTTGGCTTATATGTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTGCTGTGGTTAGCAAATTGCACAAACTTATCAACTGTAATGGTGGTGTAACATATATACATTGTACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCAgtaggtttacatgccacccccccctaatttttgtttcccaagacaacttattgtttcacagattccttatgtttgtctagagatccttttgcttcagtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT