Sequence
atgc intronic sequence ATGC exonic sequenceCCCATGTGGAAGAGATGAGACACTTTCACTATTTCATGCCTTGGGGAAATTTTTGCACAACAAGAGGGAAACTAATAGTGATGCTGATATCGGTATGTAAgagctaagaactaccttgccctatcaaaagttaacttcacaaagtgctttaattcccaagcaaatatttgtcttcatattgtgatagaactactgagggt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G051138_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g13850.1 (Oryza sativa), 5'ss of exon 8
--------CCCATGTGGAAGAGATGAGACACTTTCACTATTTCATGCCTTGGGGAAATTTTTGCACAACAAGAGGGAAACTAATAGTGATGCTGATATCGGTATGTAAgagctaagaactaccttgccctatcaaaagttaacttcacaaagtgctttaattcccaagcaaatatttgtcttcatattgtgatagaactactgagggt
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ATACCTACTGCATGTGGAAGAGATGAGACACTTACATTATTCCATGCACTGGGGAAATTTTTGCACAATAAAAGAGAAACATATAGTGAAGTCGATGTCGgtatgtgataacctacctctgcacaaccttcttcttgat-attggtatttactctctccattcaaaaatataagaacttcactatatggcgatgtcggctt-------
upper sequence: GRMZM2G051138_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA16G23360.1 (Glycine max), 5'ss of exon 8
--------CCCATGTGGAAGAGATGAGACACTTTCACTATTTCATGCCTTGGGGAAATTTTTGCACAACAAGAGGGAAACTAATAGTGATGCTGATATCGGTATGTAA-
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TATTCCTTGCACTTTGGCAGAGATGAGACATTATCTTTATTTCATGCTTTGGGTAAATTTTTGCACAATAAAAGGGAGAGTGGAGTTTCAACAGAATATGgtgcgtctttgagcaaaatttgaatttcatctttctttctactcatggaaacagcagaaacataagtaggttaagttgaatctctttttaactacttaattttcttatgtggtag-
upper sequence: GRMZM2G051138_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv04s0023g03780.t01 (Vitis vinifera), 5'ss of exon 8
--------CCCATGTGGAAGAGATGAGACACTTTCACTATTTCATGCCTTGGGGAAATTTTTGCACAACAAGAGGGAAACTAATAGTGATGCTGATATCGGTATGTAAgagctaagaactac---cttgccctatcaaaagttaacttcacaaagtgctttaa---ttcccaagcaaatatttgtcttcatattgtgatagaactactgagggt
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TTTTCTTTACCCTTTGGCAGAGATGAAACACTTTCCCTATTTCATGCCCTGGGAAAATTTCTGCATAACAAAAGAGAGAGTGAAAATGCAATTGCCCCAGgtctgtcctgattttgcactcttgacatgcatggttcaagtcctatgattcatgatctttgcaatttttttaattaaagattcatcctctgtttgggttt--------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78079476|gb|DV507888.1|DV507888EST: TTTTGCACAACAAGAGGGAAACTAATAGTGATGCTGATATCGACCTGGAT TCGTTTCCTCTTAAAGAAAACCTAAGAAGAAATGCACTCAAAATGGATGTT
genomic: TTTTGCACAACAAGAGGGAAACTAATAGTGATGCTGATATCGGTATGTAAgagctaagaa ... agacctggatTCGTGTCCTCTTAAAG-AAACCTAAGAAGAAATGCACTCAAAATGGATGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCCATGTGGAAGAGATGAGACACTTTCACTATTTCATGCCTTGGGGAAATTTTTGCACAACAAGAGGGAAACTAATAGTGATGCTGATATCGGTATGTAAgagctaagaactaccttgccctatcaaaagttaacttcacaaagtgctttaattcccaagcaaatatttgtcttcatattgtgatagaactactgagggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagcaaa