Sequence
atgc intronic sequence ATGC exonic sequenceTTACCTTCCCCATGTGGAAGAGATGAGACACTTTCACTATTTCATGCCTTGGGGAAATTTTTGCACAACAAGAGGGAAACTAATAGTGATGCTGATATCGgtatgtaagagctaagaactaccttgccctatcaaaagttaacttcacaaagtgctttaattcccaagcaaatatttgtcttcatattgtgatagaacta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G051138_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g13850.1 (Oryza sativa), 5'ss of exon 8
TTACCTTCCCCATGTGGAAGAGATGAGACACTTTCACTATTTCATGCCTTGGGGAAATTTTTGCACAACAAGAGGGAAACTAATAGTGATGCTGATATCGgtatgtaagagctaagaactaccttgccctatcaaaagttaacttcacaaagtgctttaattcccaagcaaatatttgtcttcatattgtgatag-aacta
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ATACCTACTGCATGTGGAAGAGATGAGACACTTACATTATTCCATGCACTGGGGAAATTTTTGCACAATAAAAGAGAAACATATAGTGAAGTCGATGTCGgtatgtgataacctacctctgcacaaccttcttcttgat-attggtatttactctctccattcaaaaatataagaacttcactatatggcgatgtcggctt
upper sequence: GRMZM2G051138_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA16G23360.1 (Glycine max), 5'ss of exon 8
TTACCTTCCCCATGTGGAAGAGATGAGACACTTTCACTATTTCATGCCTTGGGGAAATTTTTGCACAACAAGAGGGAAACTAATAGTGATGCTGATATCGgtatgt--------aagagctaagaactaccttgccct------atcaaaa----gttaacttcacaaagt--gctttaattcccaagcaaatatttgtcttcatattgtgatagaacta
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TATTCCTTGCACTTTGGCAGAGATGAGACATTATCTTTATTTCATGCTTTGGGTAAATTTTTGCACAATAAAAGGGAGAGTGGAGTTTCAACAGAATATGgtgcgtctttgagcaaaatttgaatttcatctttctttctactcatggaaacagcagaaacataagtaggttaagttgaatctctttttaactacttaattttcttatgtggtag-----
upper sequence: GRMZM2G051138_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv04s0023g03780.t01 (Vitis vinifera), 5'ss of exon 8
TTACCTTCCCCATGTGGAAGAGATGAGACACTTTCACTATTTCATGCCTTGGGGAAATTTTTGCACAACAAGAGGGAAACTAATAGTGATGCTGATATCGgtatgtaagagctaagaactac---cttgccctatcaaaagttaacttcacaaagtgctttaa---ttcccaagcaaatatttgtcttcatattgtgatagaacta
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TTTTCTTTACCCTTTGGCAGAGATGAAACACTTTCCCTATTTCATGCCCTGGGAAAATTTCTGCATAACAAAAGAGAGAGTGAAAATGCAATTGCCCCAGgtctgtcctgattttgcactcttgacatgcatggttcaagtcctatgattcatgatctttgcaatttttttaattaaagattcatcctctgtttgggttt------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78079476|gb|DV507888.1|DV507888EST: GGGGAAATTTTTGCACAACAAGAGGGAAACTAATAGTGATGCTGATATCG ACCTGGATTCGTTTCCTCTTAAAGAAAACCTAAGAAGAAATGCACTCAAAA
genomic: GGGGAAATTTTTGCACAACAAGAGGGAAACTAATAGTGATGCTGATATCGgtatgtaaga ... gtcattgtagACCTGGATTCGTGTCCTCTTAAAG-AAACCTAAGAAGAAATGCACTCAAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTACCTTCCCCATGTGGAAGAGATGAGACACTTTCACTATTTCATGCCTTGGGGAAATTTTTGCACAACAAGAGGGAAACTAATAGTGATGCTGATATCGgtatgtaagagctaagaactaccttgccctatcaaaagttaacttcacaaagtgctttaattcccaagcaaatatttgtcttcatattgtgatagaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT