Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGAGGCCAGCCTTTCTCTAGAAGCTAAAGATCTCATTAGCAAGCTATTGTGTAATGTGGATCAGAGAATTGGAACAAAAGGTGCACATGAGATAAAGgtattcattaacagattatttgcaatgttacataatgttgaacatttcatgattgatggcacaatgtgtttatgcag

Basic information

species Zea mays
transcript GRMZM2G049088_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G049088_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os12g19290.1 (Oryza sativa), 5'ss of exon 8
TGAAGAGGCCAGCCTTTCTCTAGAAGCTAAAGATCTCATTAGCAAGCTATTGTGTAATGTGGATCAGAGAATTGGAACAAAAGGTGCACATGAGATAAAGgtattcattaa-cagattatttgcaatgttacataatgttgaacatttcatgattgatggcacaatgtgtttatgcag
|||||||||||  || || | ||||||||||||||| |||||||| ||||| ||||| | ||||  |||  ||||||||||||| |||||||||||||||||     |    || || || ||  |  |     |   ||| |  |||  | ||| || |||  |||||||  | |||
TGAAGAGGCCAAACTGTCACCAGAAGCTAAAGATCTTATTAGCAAACTATTATGTAACGCGGATTTGAGGCTTGGAACAAAAGGAGCACATGAGATAAAGgtgaaagtggttcacatgatctgttacatccttcatgtttgtaagtttggtaatttatagcatgatgtgttcttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32807715|gb|CD959949.1|CD959949
EST:     TGTGTAATGTGGATCAGAGAATTGGAACAAAAGGTGCACATGAGATAAAG                         GCACATCCATGGTTTGCAGGTGTTGAGTGGGAAAAACTATATCAGATGGAA
genomic: TGTGTAATGTGGATCAGAGAATTGGAACAAAAGGTGCACATGAGATAAAGgtattcatta ... gtttatgcagGCACATCCATGGTTTGCAGGTGTTGAGTGGGAAAAACTATATCAGATGGAA