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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTCGTAACTTCTTGCTTGCTGAGAGAATCATGCGATCAGCAAATTGTTCTCCAGTTTCTTATCCGTTGTTACCTCCAACACATCAACACCATATGTGgtaactaacctgacttgttcttttttttgcattaactaccttttgtgtgatttgtaacatgctaaatctcag

Basic information

species Zea mays
transcript GRMZM2G048067_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 5'ss of exon 7
TCTTTCGTAACTTCTTGCTTGCTGAGAGAATCATGCGATCAGCAAATTGTTCTCCAGTTTCTTATCCGTTGTTACCTCCAACACATCAACACCATATGTGgtaactaacctgacttgttcttttttttgca--ttaactaccttttgt--gtgatttgtaacatgctaaatctcag------
||||||| |||||||| |||||||||||||||||||| || ||||||||||| ||| |||| || || |||||||| ||||| ||||| ||||||||||||||| | |    ||| |   || |||||  |  ||| |||||| || |   |  | | |||  | |||||| |||       
TCTTTCGCAACTTCTTACTTGCTGAGAGAATCATGCGGTCCGCAAATTGTTCCCCAATTTCATACCCTTTGTTACCACCAACTCATCAGCACCATATGTGgtaattgatggcactagccattctttttatagtttagctacctcttctccattttctttaatttcctaaatttcaattttag

upper sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 5'ss of exon 8
TCTTTCGTAACTTCTTGCTTGCTGAGAGAATCATGCGATCAGCAAATTGTTCTCCAGTTTCTTATCCGTTGTTACCTCCAACACATCAACACCATATGTGgtaactaacctgacttgttcttttttttgca--ttaactaccttttgtgtgatttgt--aacatgctaaatctcag------
||||||| |||||||| |||||||||||||||||||| || ||||||||||| ||| |||| || || ||||| || ||||| ||||| ||||||||||||||| | |    ||| |   || |||||  |  ||| |||||| || ||   ||| |  ||  | |||||| | |       
TCTTTCGCAACTTCTTACTTGCTGAGAGAATCATGCGGTCCGCAAATTGTTCCCCAATTTCATACCCTTTGTTGCCACCAACTCATCAGCACCATATGTGgtaattgatggcactagccattctttttatagtttagctacctcttctgcattttctttaatttcctaaattttaattttag

upper sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 8
TCTTTCGTAACTTCTTGCTTGCTGAGAGAATCATGCGATCAGCAAATTGTTCTCCAGTTTCTTATCCGTTGTTACCTCCAACACATCAACACCATATGTGgtaactaacctgacttgttctttttt-ttgcattaactaccttttgtgtgatttg--taacatgctaaatctcag------------
| ||||| || ||  | ||||||||| ||||||||||||| |||||||||||||| || ||| | ||  |||||||||| || ||||| || |||||||||||       ||| |  || | |  | ||   ||    || | ||||   ||||    ||||   ||  | |               
TGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGgtattgttggtgattatttttatgatatttttttctaaacgtgttgtcaaattttgtcaacagtttatgtttttatctgcactgcag

upper sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 8
TCTTTCGTAACTTCTTGCTTGCTGAGAGAATCATGCGATCAGCAAATTGTTCTCCAGTTTCTTATCCGTTGTTACCTCCAACACATCAACACCATATGTGgtaactaacctgact--tgttctttt--ttttgcattaactaccttttgtgtgatttgtaacatgctaaatctcag------------
| ||||| || ||  | ||||||||| ||||||||||||| |||||||||||||| || ||| | ||  |||||||||| || ||||| || |||||||||||       ||| |  |||| |  |  ||||    |||     ||        ||   ||||   ||  | |               
TGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGgtattgttggtgattattgttatgataatttttttctaaacgtgttgccaacttttgtcaacagtttatgtttttatccgcactgcag

upper sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 8
TCTTTCGTAACTTCTTGCTTGCTGAGAGAATCATGCGATCAGCAAATTGTTCTCCAGTTTCTTATCCGTTGTTACCTCCAACACATCAACACCATATGTGgtaactaac-------ctgacttgttcttttttttgcattaactaccttttgtgtgatttgtaacatgctaaatctcag--------
| ||||| || ||||| |||||||||||||| |||||||| ||||| ||||| ||  ||||  | ||  |||| || ||||| ||||| || ||||||||||| |||         ||   |   |  |||| ||   |   | |   |   | ||  |  |||  ||| |    |  |        
TGTTTCGAAATTTCTTACTTGCTGAGAGAATTATGCGATCTGCAAACTGTTCCCCTATTTCACACCCCATGTTGCCCCCAACTCATCAGCATCATATGTGgtacctactggaaatactagataagtaattttgttaagtgttcaataatccatttgtctcataatgtgccatgcatgtgtgctatag