1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTGTAGATTCATCAGATCCAATTGgtgggtacttgctataagaagtatagaactctcttgtatattttttatcacttcattcacatgccattatcgattaggttgcttcttgttgatttatttt...
species | Zea mays |
transcript | GRMZM2G047867_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAGATCCAATTG GGCCAGCACAGGCACTCGTGGAGAAACCGTTTATTCAGACAATTGCTAGAGEST: gi|5871424|gb|AW017895.1|AW017895
genomic: CAGATCCAATTGgtgggtactt ... attattacagGGCCAGCACAGGCACTCGTGGAGAAACCGTTTATTCAGACAATTGCTAGAG
EST: TCCCGAAGGAAAATATGATGCTATTATTGTAGATTCATCAGATCCAATTG GGCCAGCACAGGCACTCGTGGAGAAACCGTTTATTCAGACAATTGCTAGAGEST: gi|71757237|gb|DR955174.1|DR955174
genomic: TCCCGAAGGAAAATATGATGCTATTATTGTAGATTCATCAGATCCAATTGgtgggtactt ... attattacagGGCCAGCACAGGCACTCGTGGAGAAACCGTTTATTCAGACAATTGCTAGAG
EST: TCCCGAAGGAAAATATGATGCTATTATTGTAGATTCATCAGATCCAATTG GGCCAGCACAGGCACTCGTGGAGAAACTGTTTATTCAGACAATTGCTAGAGEST: gi|5895598|gb|AW036844.1|AW036844
genomic: TCCCGAAGGAAAATATGATGCTATTATTGTAGATTCATCAGATCCAATTGgtgggtactt ... attattacagGGCCAGCACAGGCACTCGTGGAGAAACCGTTTATTCAGACAATTGCTAGAG
EST: TCCCGAAGGAAAATATGATGCTATTATTGTAGATTCATCAGATCCAATTG GGCCAGCACAGGCACTCGTGGAGAAACCGTTTATTCAGACAATTGCTAGAGEST: gi|88757916|gb|DY542057.1|DY542057
genomic: TCCCGAAGGAAAATATGATGCTATTATTGTAGATTCATCAGATCCAATTGgtgggtactt ... attattacagGGCCAGCACAGGCACTCGTGGAGAAACCGTTTATTCAGACAATTGCTAGAG
EST: TCCCGAAGGAAAATATGATGCTATTATTGTAGATTCATCAGATCCAATTG GGCCAGCACAGGCACTCGTGGAGAAACCGTTTATTCAGACAATTGCTAGAGEST: gi|5791184|gb|AI977976.1|AI977976
genomic: TCCCGAAGGAAAATATGATGCTATTATTGTAGATTCATCAGATCCAATTGgtgggtactt ... attattacagGGCCAGCACAGGCACTCGTGGAGAAACCGTTTATTCAGACAATTGCTAGAG
EST: TCCCGAAGGAAAATATGATGCTATTATTGTAGATTCATCAGATCCAATTG GGCCAGCACAGGCACTCGTGGAGAAACCGTTTATTCAGACAATTGCTAGAGEST: gi|88757557|gb|DY541698.1|DY541698
genomic: TCCCGAAGGAAAATATGATGCTATTATTGTAGATTCATCAGATCCAATTGgtgggtactt ... attattacagGGCCAGCACAGGCACTCGTGGAGAAACCGTTTATTCAGACAATTGCTAGAG
EST: ACCCGAAGGAAAATATGATGCTATTATTGTAGATTCATCAGATCCAATTG GGCCAACCCAGGCACTEST: gi|5847488|gb|AW000567.1|AW000567
genomic: TCCCGAAGGAAAATATGATGCTATTATTGTAGATTCATCAGATCCAATTGgtgggtactt ... attattacagGGCCAGCACAGGCACT
EST: TCCCGAAGGAAAATATGATGCTATTATTGTAGATTCATCAGATCCAATTG GGCCAGCACAGGCACTCGTGGAGAAACCGTTTATTCAGACAATTGCTAGAG
genomic: TCCCGAAGGAAAATATGATGCTATTATTGTAGATTCATCAGATCCAATTGgtgggtactt ... attattacagGGCCAGCACAGGCACTCGTGGAGAAACCGTTTATTCAGACAATTGCTAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTGTAGATTCATCAGATCCAATTGgtgggtacttgctataagaagtatagaactctcttgtatattttttatcacttcattcacatgccattatcgattaggttgcttcttgttgatttatttt
- - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataagaag