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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAATTGAGAAAGGCGCTCCATTTTCTCTTTGTTTAACACAGAAGCATTTCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAGgtgtgaatctagtatcctctaggactgaacaatttcaattgttcatgaaccacttatctatgtattgctaattctggtgtttggtgtgtttcag

Basic information

species Zea mays
transcript GRMZM2G047564_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047564_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os06g39344.2 (Oryza sativa), 5'ss of exon 8
AGGAATTGAGAAAGGCGCTCCATTTTCTCTTTGTTTAACACAGAAGCATTTCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAGgtgtgaatctagtatcctctaggactgaacaatttcaattg---------------ttcatgaaccacttatctatgt--------attgctaattctggtgtttggtgtgtttcag
|||| |  | ||||| |||||||||||||| |||||||| || || ||||| ||||||||||||||||||||| ||| || |||||||||| |||| ||||| |||  ||  |||||| ||  | |||| | ||| | |||               |||| |   | ||| |   | |        |||||||||||||   |||||| |||| |||
AGGACTCAAAAAAGGGGCTCCATTTTCTCTATGTTTAACTCAAAAACATTTTTCTCAAGTTGCATCAGCATATAGGAATAATGAACACTATCTATCGAAGgtatga--ctgctatcctgtacaattgaatacttttatttggttaactattttattttcaggcttctctttttcttttgcaaggacattgctaattctgacatttggtttgtt-cag

upper sequence: GRMZM2G047564_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv11s0016g04290.t01 (Vitis vinifera), 5'ss of exon 10
AGGAATTGAGAAAGGCGCTCCATTTTCTCTTTGTTTAACACAGAAGCATTTCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAGgtgtgaa------tctagtatcctctaggactgaacaatttcaattgttcatgaaccacttatctatgtattgctaattctg----gtgtttggtgtgtttcag-----------------
|||  |||  || || ||||| |||||||||||||||||||| |||||||||||   |||||| |  |||  ||| |  | |||     |||| |  |  ||| |        ||  |  |  | |       ||  |    ||   ||  |   | | ||  | |       | |||| |     ||    ||| | || | |                 
AGGTCTTGGAAAGGGGGCTCCTTTTTCTCTTTGTTTAACACAAAAGCATTTCTCCAGAGTTGCTTTGGCACGTGGAAAAAATGACAGTGATTTGTGCAGTgtgagttgctttttcctgcttttttttttttataaagaaaagaaaacttattttgctaattcccaaaaggccacaaattttaagaagtaacgggtattttcctgcaattggctgtatccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37379970|gb|CF626760.1|CF626760
EST:     TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAG                         CTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
genomic: TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAGgtgtgaatct ... tgtgtttcagCTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
EST: gi|76012489|gb|DT939659.1|DT939659
EST:     TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATTTAAG                         CTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
genomic: TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAGgtgtgaatct ... tgtgtttcagCTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
EST: gi|91873503|gb|EB403460.1|EB403460
EST:     TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATTTAAG                         CTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTGGATT
genomic: TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAGgtgtgaatct ... tgtgtttcagCTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
EST: gi|18166670|gb|BM336509.1|BM336509
EST:     TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAG                         CTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
genomic: TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAGgtgtgaatct ... tgtgtttcagCTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
EST: gi|71331740|gb|DR802726.1|DR802726
EST:     TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAG                         CTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
genomic: TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAGgtgtgaatct ... tgtgtttcagCTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
EST: gi|78078184|gb|DV506599.1|DV506599
EST:     TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAG                         CTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
genomic: TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAGgtgtgaatct ... tgtgtttcagCTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
EST: gi|88750160|gb|DY534301.1|DY534301
EST:     TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAG                         CTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
genomic: TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAGgtgtgaatct ... tgtgtttcagCTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
EST: gi|60345004|gb|DN211977.1|DN211977
EST:     TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAG                         CTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
genomic: TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAGgtgtgaatct ... tgtgtttcagCTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
EST: gi|149097994|gb|EE183939.2|EE183939
EST:     TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAG                         CTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
genomic: TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAGgtgtgaatct ... tgtgtttcagCTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
EST: gi|211171388|gb|FL176740.1|FL176740
EST:     TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAG                         CTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
genomic: TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAGgtgtgaatct ... tgtgtttcagCTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
EST: gi|76012490|gb|DT939660.1|DT939660
EST:     TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAG                         CTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
genomic: TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAGgtgtgaatct ... tgtgtttcagCTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
EST: gi|18165516|gb|BM335355.1|BM335355
EST:     TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAG                         CTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
genomic: TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAGgtgtgaatct ... tgtgtttcagCTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
EST: gi|60399515|gb|DN232327.1|DN232327
EST:     TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAG                         CTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
genomic: TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAGgtgtgaatct ... tgtgtttcagCTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
EST: gi|211528664|gb|FL445658.1|FL445658
EST:     TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAG                         CTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
genomic: TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAGgtgtgaatct ... tgtgtttcagCTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
EST: gi|211171385|gb|FL176737.1|FL176737
EST:     TATGGGACTAGTGAACACTATTTATCTAAG                         CTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
genomic: TATGGGACTAGTGAACACTATTTATCTAAGgtgtgaatct ... tgtgtttcagCTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
EST: gi|211171387|gb|FL176739.1|FL176739
EST:     ATTTATCTAAG                         CTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
genomic: ATTTATCTAAGgtgtgaatct ... tgtgtttcagCTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
EST: gi|88749306|gb|DY533447.1|DY533447
EST:     TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATTTAAG                         CTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT
genomic: TCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAGgtgtgaatct ... tgtgtttcagCTGGCTGGTGTTATGAAATTGGAATATCGCATTGCCTTGAGGTCGTCGATT