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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAATTACCTTTTGAGAAACTGCTCTATGCCTTGAGAAATTTCCCTGAGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAGgtaattcacttcttatttcgcagaacttgtgtttacatgagcgcttgcttttggataaatttgcttttacatgcgttttattatgtgttccttttaattt...

Basic information

species Zea mays
transcript GRMZM2G047223_T02
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71771757|gb|DR969694.1|DR969694
EST:     AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAG                         GTATCGAGTCGTCTAGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
genomic: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAGgtaattcact ... tttttttcagGTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
EST: gi|89247292|gb|DY619078.1|DY619078
EST:     AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAG                         GTATCGAGTCGTCTAGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
genomic: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAGgtaattcact ... tttttttcagGTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
EST: gi|60347298|gb|DN214271.1|DN214271
EST:     AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAG                         GTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
genomic: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAGgtaattcact ... tttttttcagGTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
EST: gi|61118400|gb|DN559361.1|DN559361
EST:     AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAG                         GTATCGAGTCGT
genomic: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAGgtaattcact ... tttttttcagGTATCGAGTCGT
EST: gi|18176734|gb|BM351667.1|BM351667
EST:     AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAG                         GTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
genomic: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAGgtaattcact ... tttttttcagGTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
EST: gi|91874335|gb|EB404292.1|EB404292
EST:     AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAG                         GTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
genomic: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAGgtaattcact ... tttttttcagGTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
EST: gi|78118514|gb|DV536898.1|DV536898
EST:     AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAG                         GTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
genomic: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAGgtaattcact ... tttttttcagGTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
EST: gi|78117554|gb|DV535941.1|DV535941
EST:     AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAG                         GTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
genomic: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAGgtaattcact ... tttttttcagGTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
EST: gi|78113904|gb|DV532293.1|DV532293
EST:     AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAG                         GTATCGAGTCGTCTAGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
genomic: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAGgtaattcact ... tttttttcagGTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
EST: gi|211528671|gb|FL445665.1|FL445665
EST:     AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAG                         GTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
genomic: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAGgtaattcact ... tttttttcagGTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCAAATTACCTTTTGAGAAACTGCTCTATGCCTTGAGAAATTTCCCTGAGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAGgtaattcacttcttatttcgcagaacttgtgtttacatgagcgcttgcttttggataaatttgcttttacatgcgttttattatgtgttccttttaattt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG