1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACTGGACATCTGAAGGTGGCAGATTTTGATCTATGTAAGATGCTAAAATGGAGAAGAAAAGTTAGAGAAGATAAAGCAGTCACTTCTCCAGGCAATGCTTgtaagtggactttattgtttgccactaaatatgtgctatattaatgttgacattttcccttaacttcttttgcctttcgtatcaactggcaattgttaaaatgatacag
species | Zea mays |
transcript | GRMZM2G045366_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAGAAGAAAAGTTAGAGAAGATAAAGCAGTTACTTCTCCAGGCAATGCTT GTAAATATGTGGCTCCAGAAGTCCTGCGAAATGAAGAGTATGATACCAAAGEST: gi|32858352|gb|CD998033.1|CD998033
genomic: GAGAAGAAAAGTTAGAGAAGATAAAGCAGTCACTTCTCCAGGCAATGCTTgtaagtggac ... aatgatacagGTAAATATGTGGCTCCAGAAGTCCTGCGAAATGAAGAGTATGATACCAAAG
EST: GAGAAGAAAAGTTAGAGAAGATAAAGCAGTTACTTCTCCAGGCAATGCTT GTAAATATGTGGCTCCAGAAGTCCTGCGAAATGAAGAGTATGATACCAAAGEST: gi|211486462|gb|FL339896.1|FL339896
genomic: GAGAAGAAAAGTTAGAGAAGATAAAGCAGTCACTTCTCCAGGCAATGCTTgtaagtggac ... aatgatacagGTAAATATGTGGCTCCAGAAGTCCTGCGAAATGAAGAGTATGATACCAAAG
EST: GAGAAGAAAAGTTAGAGAAGATAAAGCAGTCACTTCTCCAGGCAATGCTT GTAAATATGTGGCTCCAGAAGTCCTGCGAAATGAAGAGTATGATACCAAAGEST: gi|76287393|gb|DV026961.1|DV026961
genomic: GAGAAGAAAAGTTAGAGAAGATAAAGCAGTCACTTCTCCAGGCAATGCTTgtaagtggac ... aatgatacagGTAAATATGTGGCTCCAGAAGTCCTGCGAAATGAAGAGTATGATACCAAAG
EST: GAGAAGAAAAGTTAGAGAAGATAAAGCAGTCACTTCTCCAGGCAATGCTT GTAAATATGTGGCTCCAGAAGTCCTGCGAAATGAAGAGTATGATACCAAAGEST: gi|71760920|gb|DR958857.1|DR958857
genomic: GAGAAGAAAAGTTAGAGAAGATAAAGCAGTCACTTCTCCAGGCAATGCTTgtaagtggac ... aatgatacagGTAAATATGTGGCTCCAGAAGTCCTGCGAAATGAAGAGTATGATACCAAAG
EST: GAGAAGAAAAGTTAGAGAAGATAAAGCAGTCACTTCTCCAGGCAATGCTT GTAAATATGTGGCTCCAGAAGTCCTGCGAAATGAAGAGTATGATACCAAAGEST: gi|71307029|gb|DR789668.1|DR789668
genomic: GAGAAGAAAAGTTAGAGAAGATAAAGCAGTCACTTCTCCAGGCAATGCTTgtaagtggac ... aatgatacagGTAAATATGTGGCTCCAGAAGTCCTGCGAAATGAAGAGTATGATACCAAAG
EST: GATAAAGCAGTCACTTCTCCAGGCAATGCTT GTAAATATGTGGCTCCAGAAGTCCTGCGAAATGAAGAGTATGATACCAAAGEST: gi|76291779|gb|DV031347.1|DV031347
genomic: GATAAAGCAGTCACTTCTCCAGGCAATGCTTgtaagtggac ... aatgatacagGTAAATATGTGGCTCCAGAAGTCCTGCGAAATGAAGAGTATGATACCAAAG
EST: AAGAAAAGTTAGAGAAGATAAAGCAGTCACTTCTCCAGGCAATGCTT GTAAATATGTGGCTCCAGAAGTCCTGCGAAATGAAGAGTATGATACCAAAGEST: gi|76287394|gb|DV026962.1|DV026962
genomic: AAGAAAAGTTAGAGAAGATAAAGCAGTCACTTCTCCAGGCAATGCTTgtaagtggac ... aatgatacagGTAAATATGTGGCTCCAGAAGTCCTGCGAAATGAAGAGTATGATACCAAAG
EST: GAGAAGAAAAGTTAGAGAAGATAAAGCAGTCACTTCTCCAGGCAATGCTT GTAAATATGTGGCTCCAGAAGTCCTGCGAAEST: gi|74234286|gb|DT642200.1|DT642200
genomic: GAGAAGAAAAGTTAGAGAAGATAAAGCAGTCACTTCTCCAGGCAATGCTTgtaagtggac ... aatgatacagGTAAATATGTGGCTCCAGAAGTCCTGCGAA
EST: GAGAAGAAAAGTTAGAGAAGATAAAGCAGTCACTTCTCCAGGCAATGCTT GTAAATATGTGGCTCCAGAAGTCCTGCGAAATGAAGAGTATGATACCAAAG
genomic: GAGAAGAAAAGTTAGAGAAGATAAAGCAGTCACTTCTCCAGGCAATGCTTgtaagtggac ... aatgatacagGTAAATATGTGGCTCCAGAAGTCCTGCGAAATGAAGAGTATGATACCAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGGACATCTGAAGGTGGCAGATTTTGATCTATGTAAGATGCTAAAATGGAGAAGAAAAGTTAGAGAAGATAAAGCAGTCACTTCTCCAGGCAATGCTTgtaagtggactttattgtttgccactaaatatgtgctatattaatgttgacattttcccttaacttcttttgcctttcgtatcaactggcaattgttaaaatgatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA