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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatatgttaaatcatgtttctgttcacatctattatccattttacctgcaggtactgtagttgtatacttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag

Basic information

species Zea mays
transcript GRMZM2G045330_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 9
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatatgttaaatcatgtttctgttcacatctattat-ccattttacctgcagg-tactgtagttgtatacttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag
|||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||  ||||||||||| ||||||||||| ||||||||||||  ||| | ||    | | | |  | |||| |   | || ||||||||| ||||||  | |||||      ||||  |  |||   ||   |   | || ||   |   | || ||  ||| |    | |   |  |    |  | ||     |   ||  |||| | | |                             
GTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAGgtagccatgtttt----cttatattggatcaccttcctcataccattttacttgcagggcattgtaggc---cacttcaaaaccagtttctgcatcatgtttaatttgaaataaaaaaaatgtatctgcagctgcttaactgatccatctgttgttctttcgcttaccaccag-----------------------------

upper sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA06G06850.1 (Glycine max), 5'ss of exon 9
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatatgttaaatcatgtttctgttcacatctattatccattttacctgcaggtactgtagttgtatacttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag
|| ||||| || || ||||| |||||  |||| || ||||||||||| || | ||| || |||||||| |||||||| || || |||||||||||||| |  |        ||  | | ||  |||| | |  ||     ||        |   | |||  ||    || || |    | | |||      || | | |   |       || || | || ||                                                                         
GTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtctata--------attttatctcc-ttcaga-cagttggtttttcagatgataaaaaatgtgatta---acatgaaaa--atattcctgggcattctaacacatca------aaattttatgtag-------------------------------------------------------------------------

upper sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA12G15470.2 (Glycine max), 5'ss of exon 9
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatatgttaaatc-atgtttctgttcacatctattatccattttacctgcaggtactgtagttgtatacttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag
||||||||||||||||| || ||||| || || || ||||| || || ||||| ||||| || || |||||||| || |||||||| |||||||||||| | | || |   ||| ||  | || || | ||  || |      || ||    |    |  | | |         ||   | |    |||  ||| |||||                                                                                                 
GTTCTTGGTACTCCAACACGCGAGGAAATCCGTTGTATGAACCCAAATTATACAGAGTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatgacatttctcatccatcctccttttgatattcatcac-----ttgccattggactttaaaatggggattaaaaagatgaaa----aaatagttgtcaaaatcaa--------------------------------------------------------------------------------------------

upper sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA13G30060.2 (Glycine max), 5'ss of exon 9
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatatgttaaatcatgtttctgttcacatctattatccattttacctgcaggtactgtagtt-gtat-acttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag
|| ||||| || || || || |||||  |||| || ||||||||||| || | ||| || |||||||| |||||||| || || ||||||||||||||||  |        ||  | | |   |||| | | |||     || |   ||     | |||| || | || |  ||  |   ||| |||   |  || | | |   |       || || | || ||                                                                         
GTGCTTGGCACACCCACTCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgtatata--------attttatctactttcaga-caattggtttttctga-tgattaaaatgtaattagcatgaaatgatgaaaacattcctggacattctaacacatca------aaattctgtgtag-------------------------------------------------------------------------

upper sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA06G42840.1 (Glycine max), 5'ss of exon 9
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatatgttaaatc-atgtttctgttcacatctattatccattttacctgcaggtactgtagttgtatacttgtagtccacagtccaaaatgt--tttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag
|||||||||||||| || || ||||| || || |||||||| || || ||||| || || || || |||||||| || |||||||| |||||||||||| |   || |   ||| || || || || | ||  |            | ||||   | || | ||  | |  || | |  | ||   ||||  |  |||  ||   |                                                                                             
GTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCAAATTATACAGATTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGgtaatggcatttctcatccatattccttttgatattcaacg---------cttgca---attggactttaaaatatggattaaaaagatgaaaaaataattttcaaaatcaa-------------------------------------------------------------------------------------------

upper sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA04G06760.1 (Glycine max), 5'ss of exon 9
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatatgttaaatcatgtttctgttcacatctattatccattttacctgcaggtactgtagttgtatacttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag
|| ||||| || || || || |||||  |||| || ||||||||||| || | ||| || ||||||||||||||||| || || |||||||||||||| |  |        ||  | | ||  |||| |   | |     ||| |  ||     | |||  ||    || || |    | | |||      || | | |   |       || |||| || ||                                                                         
GTGCTTGGCACGCCCACTCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCTCAGATAAAAGCACACCCATGGCACAAGgtctata--------attttatctcctttcaga--cagtgggtttttcagatgatcaaaatgtgatta---acatgaaa---atattcctgggcattctaacacatca------aaattgtgtgtag-------------------------------------------------------------------------

upper sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA15G09090.1 (Glycine max), 5'ss of exon 9
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatatgttaaatcatgtttctgttcacatctattatccattttacctgcaggtactgtagttgtatacttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag
|| ||||| || || || || |||||  |||| || ||||||||||| || | ||| || |||||||| |||||||| || || ||||||||||||||  | | || |||     |  ||     || ||   || | ||  | |     | ||| |     |||| || | |  |  ||| || || |   ||  |||  | |  |                                                                                         
GTGCTTGGCACACCCACTCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGgt-ctaaaatttta---tctactttcagaca-attggtttttcagatgattaaaatgtaattagcatgtaaacat-tcctggacattctaaca--cttcgaaattgtgtag-----------------------------------------------------------------------------------------

upper sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
lower sequence: AT4G18710.1 (Arabidopsis thaliana), 5'ss of exon 8
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatatgttaaatcatgtttctgttcacatctattatccattttacctgcaggtactgtagttgtatacttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag
||||||||||| ||||| || || || || || || ||||||||  | || || || ||||||||||| ||||||||||| ||||| |||||||||||  |  | | ||   |  | ||| ||      |   |  | || |||   |      ||   |  ||   |    ||       ||  |                                                                                                              
GTTCTTGGTACACCAACTCGAGAAGAAATCCGTTGTATGAATCCACATTACACAGATTTCAGGTTTCCACAGATAAAGGCACATCCCTGGCACAAGgt--tagtgtctt---ttctctttttgcatgtgttcttgtttcagtttctttcttcacacatcaactgatcataattacgttttggtttag-------------------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
lower sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 9
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatatgttaaatcatgtttctgttcacatctattatccattttacctgcaggtac-tgtagttgtatacttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag
||||||||||| ||||| || || || || || || |||||||| |  |||||||| || |||||||| |||||||| || || || ||||||||||| | |||   || | | || |  |  ||    |   ||   || || |     |  ||  ||        || |   |   |  ||  ||  || || || |                                                                                                  
GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGgtttgcat---tttatttatttcccctttattgtggttttgtcagttaataacaacatagatgagaccagttaataacaa--cgtagatcattatattatctata------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
lower sequence: Vv12s0028g01810.t01 (Vitis vinifera), 5'ss of exon 9
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtat-tcatatgttaaatcatgt--ttctgttcacatctattatccattttacctgcaggtactgtagttgtatacttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag
|||||||||||||||||  | || || || || || ||||| || || |||||||| ||||||||||||||||| || |||||||| |||||||||||||  ||| |  |   |  |    |  |||     | | |||   ||||  |    |||||  | || ||||   |   |    |   |    |||| | |                                                                                                     
GTTCTTGGTACTCCAACTAGAGAAGAAATTCGATGTATGAACCCGAATTATACTGATTTCAGGTTTCCTCAGATCAAAGCTCATCCTTGGCACAAGgtatgccatttcctggtttcttcaatgatgtggtagtttcttaaatatttagcaataaggtagggaagatgta--atgagaacggattttatttaatgctct-----------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
lower sequence: PP1S60_85V6.1 (Physcomitrella patens), 5'ss of exon 9
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatatgttaaatcatgtttctgttcacatctattatccattttacctgcaggtactgtagttgtatacttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag
||  | || || || || ||||||||||||  |||||||||||| ||||| || ||||||| |||||| || || |||||||| || |||||||| ||||            |  | ||| ||    || || || ||||| ||       |||| ||||||     | | |   |  ||   |     |||||||   | | || |  |   |                                                                                  
GTGTTGGGAACACCGACTCGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCGTGGCACAAAgtat-----------gtggtctttgtgaatgca-ctgtt-tccatcttgggctttggtagtgtagtccagaagtggagatgtacgacc----gtgttttcgt-gtgagcggtgggttt----------------------------------------------------------------------------------

upper sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
lower sequence: PP1S60_100V6.1 (Physcomitrella patens), 5'ss of exon 9
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatatgttaaatcatgtttctgttcacatctattatccattttacctgcaggtactgtagttgtatacttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag
||  | || || || || |||||||||||   |||||||||||| ||||| || ||||||| |||||| || || |||||||| ||||||||||| ||||                || | |||  |       | | ||| ||       |||| ||||||     | | |   |  ||   |     |||||||    |     |  |                                                                                      
GTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAAgtatgtg-------------gtctgtgtgaatgcactgttttcatcttgggctttggtagtgtagtccagaagtggagatgtacgacc----gtgttttcgtgtgtgagcggtgggt-----------------------------------------------------------------------------------

upper sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
lower sequence: PP1S74_168V6.1 (Physcomitrella patens), 5'ss of exon 8
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatatgttaaatcatgtttctgttcacatctattatccattttacctgcaggtactgtagttgtatacttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag
||  | || || || || || |||||||||  |||||||||||| ||||| || ||||||| ||||||||| || ||||||||||| ||||||||||||       | |      ||| |  ||   |   |||  | | ||  |  |    ||||||||   || |  ||| |   |     |   | |  |   || ||    |                                                                                          
GTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAGgtacg-----gctggtctgtgtgttagtggtctggtatggtgctttggagat----gtactgtaacagt-tgattggaaagcgttacctgtattcataataacggtgatt------------------------------------------------------------------------------------------

upper sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
lower sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtat---tcatatgttaaatcatgtttctgttcaca-tctattatccattttacctgcaggtactgtagttgtatacttgtagtccacagtccaaaatgttttcaaa-gggcgctgaagaacttgtt-tgcagatcatatcgaaactttgagctcagaatgcatcaat-tactaactgatgcctctactttccgttttatcctccag
||  | || || || || ||||||||||||  |||||||||||| ||||| || ||||||| ||||||||| || |||||||| || |||||||||||||   |  ||||||       | |  | ||     ||||||||  | |||      ||| | | |    || | || |   |      |    ||| |  |     || |||||    ||| ||| ||      | |  | | | |   ||   ||    | |||  | | || ||||   |    |    |             
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggttagctatttttagtggtctattatataatttg---ataggaattat--ccgtgtcctcgatattggtgattttgaatttggttggttggacgctgct--actcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag----------

upper sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
lower sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatatgttaaatcatgtttctgttcacatctattatccattttacctgcaggtactgtagttgtatacttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag
||| | || || || || |||||||||||   |||||||||||| ||||| || ||||||| |||||| || || ||||| || || |||||||| ||||   | | ||     |    | || |  ||||   |     ||     || ||    ||  || ||  |  ||  |||  |  | |      |  |  |  |||  ||        ||  |  |    |      |  ||| | |  ||   |   ||        || |    |   | |  |  ||         
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtat--gttttttgtgcgaatgctatgatgtcatc--ctgggtgttgcggttgtag----tgcggtagtggatgtg-ggtcagcctttc------tcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag-----

upper sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
lower sequence: EFJ07923 (Selaginella moellendorffii), 5'ss of exon 10
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcata-tgttaaatcatgtttctgttcacatctattatccattttacctgcaggtactgtagttgtatacttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag
||  | |||||||| || || ||||| ||    ||||||||||| ||||| || ||||| | ||| |||||||| || || ||||| ||||||||||||     | |  |     || | ||| |     |||  | |  || |  |  |  |  |                                                                                                                                             
GTCTTAGGTACTCCTACTCGGGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgtaagagcaatcatccggtatatctctctctctgtct-ctcttgatgtggctcgttgacag--------------------------------------------------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
lower sequence: EFJ07216 (Selaginella moellendorffii), 5'ss of exon 10
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcata-tgttaaatcatgtttctgttcacatctattatccattttacctgcaggtactgtagttgtatacttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag
||  | |||||||| || || ||||| ||    ||||||||||| ||||| || ||||| | ||| |||||||| || || ||||| ||||||||||||     | |  |     || | ||| |     |||  | |  || |  |  |  |  |                                                                                                                                             
GTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgtaagagcaatcatccggtatatctctctctctgtct-ctcttgatgtggctcgttgacag--------------------------------------------------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 9
lower sequence: EFJ10962 (Selaginella moellendorffii), 5'ss of exon 9
GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatatgttaaatcatgtttctgttcacatctattatccattttacctgcaggtactgtagttgtatacttgtagtccacagtccaaaatgttttcaaagggcgctgaagaacttgtttgcagatcatatcgaaactttgagctcagaatgcatcaattactaactgatgcctctactttccgttttatcctccag
|||||||| || || || || ||||||||   ||| |||||||||||||| || || |||| ||| ||||| || ||||| ||||| |||||||||||   | || |   ||     ||  ||      ||  |||   | |      ||||                                                                                                                                                
GTTCTTGGAACCCCTACTCGCGAGGAGATCAAGTGTATGAATCCCAACTACACGGAATTCAAGTTCCCTCAAATCAAGGCCCATCCTTGGCACAAGgtg--cgtaggc--aacttctttgttggggcggtcgtttacgtagtaacgtggcag------------------------------------------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31998126|gb|CD661939.1|CD661939
EST:     ACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAG                         ATTTTCCACAAGAGAATGCCTCCTGAAGCCATAGACCTTGCTTCTCGTCTC
genomic: ACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatat ... tatcctccagATTTTCCACAAGAGAATGCCTCCTGAAGCCATAGACCTTGCTTCTCGTCTC
EST: gi|211318161|gb|FL216119.1|FL216119
EST:     ACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAG                         ATTTTCCACAAGAGAATGCCTCCTGAAGCCATAGACCTTGCTTCCCGTCTC
genomic: ACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatat ... tatcctccagATTTTCCACAAGAGAATGCCTCCTGAAGCCATAGACCTTGCTTCTCGTCTC
EST: gi|20508268|gb|BQ279947.1|BQ279947
EST:     ACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAG                         ATTTTCCACAAGAGAATGCCTCCTGAAGCCATAGACCTTGCTTCTCGTCTC
genomic: ACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatat ... tatcctccagATTTTCCACAAGAGAATGCCTCCTGAAGCCATAGACCTTGCTTCTCGTCTC
EST: gi|67028577|gb|CO457326.1|CO457326
EST:     ACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAG                         ATTTTCCACAAGAGAATGCCTCCTGAAGCCATAGACCTTGCTTCCCGTCTC
genomic: ACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatat ... tatcctccagATTTTCCACAAGAGAATGCCTCCTGAAGCCATAGACCTTGCTTCTCGTCTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 258

GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatat ... tatcctccagATTTTCCACAAGAGAATGCCTCCTGAAGCCATAGACCTTGCTTCTCGTCTCCTTCAGTATTCACCAAGTCTTCGCTGCTCTGCT


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 106

GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatat ... tatcctccagATTTTCCACAAGAGAATGCCTCCTGAAGCCATAGACCTTGCTTCTCGTCTCCTTCAGTATTCACCAAGTCTTCGCTGCTCTGCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 165

GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatat ... tatcctccagATTTTCCACAAGAGAATGCCTCCTGAAGCCATAGACCTTGCTTCTCGTCTCCTTCAGTATTCACCAAGTCTTCGCTGCTCTGCT


Block sizes: 45 (upstream exon), 48 (downstream exon)
Score: 117

GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAGgtattcatat ... tatcctccagATTTTCCACAAGAGAATGCCTCCTGAAGCCATAGACCTTGCTTCTCGTCTCCTTCAGTATTCACCAAGTCTTCGCTGCTCTGCT