Sequence
atgc intronic sequence ATGC exonic sequenceATTTGTTGGTGACAAATGGTATTATTAAAATTGCTGACTTTGGGTTGGCAAGAGAAATATCTTCCAATCCTCCTTACACTGATTATGTTTCCACCAGATGgtaagtttgtgcatgaaatttacaatttgttttatataatgatatatttatgcaactaaatcctcaagatcatctatattctttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G045241_T07 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g63020.1 (Oryza sativa), 5'ss of exon 7
ATTTGTTGGTGACAAATGGTATTATTAAAATTGCTGACTTTGGGTTGGCAAGAGAAATATCTTCCAATCCTCCTTACACTGATTATGTTTCCACCAGATGgtaagtttgtgcatgaaatttacaatttgttttatataatgatatatttatgcaactaaatcctcaagatcatctatattctttag
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ATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGGCAAGAGAAGTATCTTCCAGTCCTCCTTATACTGACTATGTTTCCACCAGATGgtgagtttgtgtttcaaatttatc-tctgtataaccagtgaatatgtatacaccactttatccaaattattgtgaa-atggtgaag
upper sequence: GRMZM2G045241_T07 (Zea mays), 5'ss of exon 3
lower sequence: AT4G13020.1 (Arabidopsis thaliana), 5'ss of exon 7
ATTTGTTGGTGACAAATGGTATTATTAAAATTGCTGACTTTGGGTTGGCAAGAGAAATATCTTCCAATCCTCCTTACACTGATTATGTTTCCACCAGATGgtaagt---ttgtgcatgaaatttacaatttgttt-tatataatgatatatt-tatgcaactaaatcctcaagatcatctatatt--ctttag---------
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ATTTGCTGGTGACCAACAATATCCTGAAAATTGCTGACTTTGGGTTGGCTAGAGAAGTTGCATCTATGCCTCCTTACACTGAATATGTGTCCACACGTTGgtaagtgatttctctttgatattgccttcgcattcatgcatgaaagtatgtggtataaggtgatatcgacgtataccttattattggctctgactgcaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211539568|gb|FL066768.1|FL066768EST: AGAGAAATATCTTCCAATCCTCCTTACACTGATTATGTTTCCACCAGATG GTATCGGGCTCCAGAGGTTCTACTGC
genomic: AGAGAAATATCTTCCAATCCTCCTTACACTGATTATGTTTCCACCAGATGgtaagtttgt ... tattctttagGTATCGGGCTCCAGAGGTTCTACTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTTGTTGGTGACAAATGGTATTATTAAAATTGCTGACTTTGGGTTGGCAAGAGAAATATCTTCCAATCCTCCTTACACTGATTATGTTTCCACCAGATGgtaagtttgtgcatgaaatttacaatttgttttatataatgatatatttatgcaactaaatcctcaagatcatctatattctttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG