1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCAGATCAGTTTCAGCACGGTCCGGGACAAAATCAGGGCTAGAGTTGGCTGGATGCCTGAGATGTTCATGGACTGCGAAAGGCGCAACTTTGTCGTTCAGgtattgcccccacaatccgttatgtcacccggtcctcccgcacctttcttttttttcgttgcacggctgcctcacagttagtgcacaagtaaaataaaaggcaagtggccctttattttgggtgcactcctaccggtagtgcatgttaagctcacaactacatctgttgctgtttacattggcaccag
species | Zea mays |
transcript | GRMZM2G044866_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGATGCCTGAGATGTTCATGGACTGCGAAAGGCGCAACTTTGTCGTTCAG GTATACCACAGGGAGCTACTGGAGCAGATGATTGCATCTGGTAGGATGCCCEST: gi|71313493|gb|DR793305.1|DR793305
genomic: GGATGCCTGAGATGTTCATGGACTGCGAAAGGCGCAACTTTGTCGTTCAGgtattgcccc ... ttggcaccagGTATACCACAGGGAGCTACTGGAGCAGATGATTGCATCTGGTAGGATGCCC
EST: GGATGCCTGAGATGTTCATGGACTGCGAAAGGCGCAACTTTGTCGTTCAG GTATACCACAGGGAGCTACTGGAGCAGATGATTGCATCTGGTAGGATGCCCEST: gi|32936757|gb|CF041576.1|CF041576
genomic: GGATGCCTGAGATGTTCATGGACTGCGAAAGGCGCAACTTTGTCGTTCAGgtattgcccc ... ttggcaccagGTATACCACAGGGAGCTACTGGAGCAGATGATTGCATCTGGTAGGATGCCC
EST: GGATGCCTGAGATGTTCATGGACTGCGAAAGGCGCAACTTTGTCGTTCAG GTATACCACAGGGAGCTACTGGAGCAGATGATTGCATCTGGTAGGATGCCCEST: gi|83278829|gb|DV942837.1|DV942837
genomic: GGATGCCTGAGATGTTCATGGACTGCGAAAGGCGCAACTTTGTCGTTCAGgtattgcccc ... ttggcaccagGTATACCACAGGGAGCTACTGGAGCAGATGATTGCATCTGGTAGGATGCCC
EST: GGATGCCTGAGATGTTCATGGACTGCGAAAGGCGCAACTTTGTCGTTCAG GTATACCACAGGGAGCTACTGGAGCAGATGATTGCATCTGGTAGGATGCCCEST: gi|4647294|gb|AI622369.1|AI622369
genomic: GGATGCCTGAGATGTTCATGGACTGCGAAAGGCGCAACTTTGTCGTTCAGgtattgcccc ... ttggcaccagGTATACCACAGGGAGCTACTGGAGCAGATGATTGCATCTGGTAGGATGCCC
EST: GGATGCCTGAGATGTTCATGGACTGCGAAAGGCGCAACTTTGTCGTTCAG GTATACCACAGGGAGCTACTGGAGCAGATGATTGCATCTGGTAGGATGCCCEST: gi|32936590|gb|CF041409.1|CF041409
genomic: GGATGCCTGAGATGTTCATGGACTGCGAAAGGCGCAACTTTGTCGTTCAGgtattgcccc ... ttggcaccagGTATACCACAGGGAGCTACTGGAGCAGATGATTGCATCTGGTAGGATGCCC
EST: GGATGCCTGAGATGTTCATGGACTGCGAAAGGCGCAACTTTGTCGTTCAG GTATACCACAGGGAGCTACTGGAGCAGATGATTGCATCTGGTAGAATGCCCEST: gi|32936641|gb|CF041460.1|CF041460
genomic: GGATGCCTGAGATGTTCATGGACTGCGAAAGGCGCAACTTTGTCGTTCAGgtattgcccc ... ttggcaccagGTATACCACAGGGAGCTACTGGAGCAGATGATTGCATCTGGTAGGATGCCC
EST: GGATGCCTGAGATGTTCATGGACTGCGAAAGGCGCAACTTTGTCGTTCAG GTATACCACAGGGAGCTACTGGAGCAGATGATTGCATCTGGTAGGATGCCCEST: gi|32936797|gb|CF041616.1|CF041616
genomic: GGATGCCTGAGATGTTCATGGACTGCGAAAGGCGCAACTTTGTCGTTCAGgtattgcccc ... ttggcaccagGTATACCACAGGGAGCTACTGGAGCAGATGATTGCATCTGGTAGGATGCCC
EST: GGATGCCTGAGATGTTCATGGACTGCGAAAGGCGCAACTTTGTCGTTCAG GTATACCACAGGGAGCTACTGGAGCAGATGATTGCATCTGGTAGGATGCCC
genomic: GGATGCCTGAGATGTTCATGGACTGCGAAAGGCGCAACTTTGTCGTTCAGgtattgcccc ... ttggcaccagGTATACCACAGGGAGCTACTGGAGCAGATGATTGCATCTGGTAGGATGCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGATCAGTTTCAGCACGGTCCGGGACAAAATCAGGGCTAGAGTTGGCTGGATGCCTGAGATGTTCATGGACTGCGAAAGGCGCAACTTTGTCGTTCAGgtattgcccccacaatccgttatgtcacccggtcctcccgcacctttcttttttttcgttgcacggctgcctcacagttagtgcacaagtaaaataaaaggcaagtggccctttattttgggtgcactcctaccggtagtgcatgttaagctcacaactacatctgttgctgtttacattggcaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA