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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGAAATAATGGCTGAGCCTGATCGGTTTGTAGAGCCTGATCCAGAACTTCCTTTAGCTCTTCTTGATCAAAAAGAGgttagcacagttccaccttattattagagatatgtatagtctagagatatgtatgtactttacttatactctaagttgtatcttgattatatatatgaaa...

Basic information

species Zea mays
transcript GRMZM2G044819_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044819_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g14810.2 (Oryza sativa), 5'ss of exon 9
AGAGAAATAATGGCTGAGCCTGATCGGTTTGTAGAGCCTGATCCAGAACTTCCTTTAGCTCTTCTTGATCAAAAAGAGgttagcacagttccaccttatta-ttagagatatgtatagtctagagatatgtatgtactttact-tatactctaagttgtatcttgattatatatatgaaa
|| || |||||||||||||| || || ||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||| ||||     ||||||  | ||   |||   |  |   ||     |  | |||||||  ||  ||    |   |  | ||    ||  |   || |  
AGTGAGATAATGGCTGAGCCGGAACGATTTGTAGAGCCTGATCCTGAACTGCCTTTAGCTCTTCTGGATCAAAAGGAGgttaacacacaattaccttacaagttcatgatccattaataatattagaacttttgtacttctctgcattactttgctgatttcccctttcaactcatcag-

upper sequence: GRMZM2G044819_T02 (Zea mays), 5'ss of exon 8
lower sequence: AT5G48960.1 (Arabidopsis thaliana), 5'ss of exon 9
AGAGAAATAATGGCTGAGCCTGATCGGTTTGTAGAGCCTGATCCAGAACTTCCTTTAGCTCTTCTTGATCAAAAAGAGgt--tagcacagttccaccttattat-tagagatatgtatagtctagagatatgtatgtactttacttatactctaagttgtatcttgattatatatatgaaa
|| || |||||| |  |||| || |  ||||| ||||| || |||||||| |||||||||||| | |||||||| |||||  | |  ||||     |  | ||| |  |  |||| || || |  || | |  || |   | |  |    ||  ||                         
AGTGAGATAATGTCCAAGCCGGAACTATTTGTCGAGCCAGACCCAGAACTACCTTTAGCTCTTTTAGATCAAAAGGAGgtaatggttcagtctttacacaatatatctaactatg-atggtttc-agttgttaatat-tgtcatgttcgttcatag-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6101991|gb|AW126461.1|AW126461
EST:     AGCTCTTCTTGATCAAAAAGAG                         GCTGGAAAAAAGTTGCTTCTCATTACTAATTCAGATTTCCATTATACAAAC
genomic: AGCTCTTCTTGATCAAAAAGAGgttagcacag ... aaactatcagGCTGGAAAAAAGTTGCTTCTCATTACTAATTCAGATTTCCATTATACAAAC
EST: gi|32937883|gb|CF042702.1|CF042702
EST:     TTGTAGAGCCTGATCCAGAACTTCCTTTAGCTCTTCTTGATCAAAAAGAG                         GCTGGAAAAAAGCTGCTTCTCATTACTAATTCAGATTTCCATTATACAAAC
genomic: TTGTAGAGCCTGATCCAGAACTTCCTTTAGCTCTTCTTGATCAAAAAGAGgttagcacag ... aaactatcagGCTGGAAAAAAGTTGCTTCTCATTACTAATTCAGATTTCCATTATACAAAC
EST: gi|32833943|gb|CD973621.1|CD973621
EST:     TTGTAGAGCCTGATCCAGAACTTCCTTTAGCTCTTCTTGATCAAAAAGAG                         GCTGGAAAAAAGTTGCTTCTCATTACTAATTCAGATTTCCATTATACAAAC
genomic: TTGTAGAGCCTGATCCAGAACTTCCTTTAGCTCTTCTTGATCAAAAAGAGgttagcacag ... aaactatcagGCTGGAAAAAAGTTGCTTCTCATTACTAATTCAGATTTCCATTATACAAAC