1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTGgtaatccccgtaaaaaaacgcaacttcaattgcatcatttaccgaacaatcctggcagatgattagtctggctatcgtaacatatatctcgcag
species | Zea mays |
transcript | GRMZM2G044629_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTG CACTGAAGTCCAAGAAGTTGATGGAAGATATGGCCGCGCGGGGTGTGAAATEST: gi|149014175|gb|EE043721.2|EE043721
genomic: GTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTGgtaatccccg ... tatctcgcagCACTGAAGTCCAAGAAGTTGATGGAAGATATGGCCGCGCGGGGTGTGAAAT
EST: GTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTG CACTGAAGTCCAAGAAGTTGATGGAAGATATGGCCGCGCGGGGTGTGAAAEST: gi|148958334|gb|EC904558.2|EC904558
genomic: GTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTGgtaatccccg ... tatctcgcagCACTGAAGTCCAAGAAGTTGATGGAAGATATGGCCGCGCGGGGTGTGAAA
EST: GTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTG CACTGAAGTCCNAGAAGTTGATGGAEST: gi|32941368|gb|CF046187.1|CF046187
genomic: GTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTGgtaatccccg ... tatctcgcagCACTGAAGTCCAAGAAGTTGATGGA
EST: GTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTG CACTGAAGTCCAAGAAGTTGATGGAAGATATGGCCGCGCGGGGTGTGAAAT
genomic: GTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTGgtaatccccg ... tatctcgcagCACTGAAGTCCAAGAAGTTGATGGAAGATATGGCCGCGCGGGGTGTGAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTGgtaatccccgtaaaaaaacgcaacttcaattgcatcatttaccgaacaatcctggcagatgattagtctggctatcgtaacatatatctcgcag
- GCAAAG
- - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - ATGCTG