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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaatgaaaatttctttcctagtgctatgtttatattctgctttgcagtgatgcagatttttctctttattgaacagtaatatcagcctctgtagg...

Basic information

species Zea mays
transcript GRMZM2G044348_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044348_T03 (Zea mays), 5'ss of exon 8
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 5'ss of exon 9
CTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaatgaaaatttctttcctagtgctatgtttatattctgctttgcagtgatgcagatttttctctttattgaacagta-atatcagcctctgtagg-
||| |||| ||||| || ||  |||  |||||||| ||||||||||| ||||||||||||||||| |||||| ||   |   || |||  |  ||    ||| || ||  |  | | | || || |     |||     | ||||  | |  | || |  |    ||   | 
CTTTTGTTCCCAACAGCTGATTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTGgtaaggtgtttgaaattcaattttaaaaatatcttcat--tgggttgtccattgttttctgtttgcagatatattagagaagacatttttgaagttgggagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149027787|gb|EE154597.2|EE154597
EST:     CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GTATATTCGTCGCACTTCCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA
genomic: CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaatg ... ttgcttgcagGTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA
EST: gi|94475589|gb|EB704547.1|EB704547
EST:     CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA
genomic: CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaatg ... ttgcttgcagGTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA
EST: gi|7137682|gb|AW499217.1|AW499217
EST:     CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GTATATTCGTCGCACTTGCCTTGCGTTTTGATGTCTCAAGAGGTACCAAGA
genomic: CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaatg ... ttgcttgcagGTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA
EST: gi|67018214|gb|CO446963.1|CO446963
EST:     CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GTATATTCGTCGCACTTGCCTTGCGTTTTGATGTCTCAAGAGGTACCAAGA
genomic: CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaatg ... ttgcttgcagGTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA
EST: gi|149100816|gb|EE186910.2|EE186910
EST:     CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA
genomic: CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaatg ... ttgcttgcagGTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA
EST: gi|148943972|gb|EC889053.2|EC889053
EST:     CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA
genomic: CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaatg ... ttgcttgcagGTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA
EST: gi|71426478|gb|DR807528.1|DR807528
EST:     CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA
genomic: CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaatg ... ttgcttgcagGTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA