1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TGCGAATTCTGCTGCTGTGGCCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAGgtttgagtctcttggtttacttattgttatttccttagattttattgtcatatttttttttttgttcaaaactag
species | Zea mays |
transcript | GRMZM2G044237_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CCATTACAACTACAGACCTTGGTAGCAAGAGCATTGCTGTCTAGACTGAG ATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGEST: gi|148956344|gb|EC902151.2|EC902151
genomic: CCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAGgtttgagtct ... tcaaaactagATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTG
EST: CCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAG ATTGGAGGAGTGGCTATTEST: gi|78092275|gb|DV520649.1|DV520649
genomic: CCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAGgtttgagtct ... tcaaaactagATTGGAGGAGTGGCTATT
EST: CCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAG ATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATGEST: gi|149009106|gb|EE041258.2|EE041258
genomic: CCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAGgtttgagtct ... tcaaaactagATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATG
EST: CATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGCTC-AGACTGAG ATTGCAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAACGTTCTGGAATGEST: gi|148932140|gb|EC875563.2|EC875563
genomic: CATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTG-TCCAGACTGAGgtttgagtct ... tcaaaactagATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATG
EST: CCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAG ATTGGAGGAGTGGCTEST: gi|60348874|gb|DN215847.1|DN215847
genomic: CCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAGgtttgagtct ... tcaaaactagATTGGAGGAGTGGCT
EST: CCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAG ATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATGEST: gi|76917242|gb|DV166726.1|DV166726
genomic: CCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAGgtttgagtct ... tcaaaactagATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATG
EST: GCATTGCTGTCCAGACTGAG ATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATG
genomic: GCATTGCTGTCCAGACTGAGgtttgagtct ... tcaaaactagATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCGAATTCTGCTGCTGTGGCCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAGgtttgagtctcttggtttacttattgttatttccttagattttattgtcatatttttttttttgttcaaaactag
- - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - AGAGCA