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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATGATTCACCCAAATATGGCAACAATGCTTGGTgtatgttcccaccctcaggttcccccttcctctattgaggcatgtagcaaagtttgatggccatttttttctactacag

Basic information

species Zea mays
transcript GRMZM2G044237_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044237_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g17120.2 (Oryza sativa), 5'ss of exon 9
ATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATGATTCACCCAAATATGGCAACAATGCTTGGTgtatgttcc----caccctcaggttcc--------cccttcctctattgaggcatgtagcaaagtttg-atgg---ccatttt-----tttctactacag
|||||||||||| |||| | |||||| || ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| ||||     ||  ||||  ||||        |   |||||||||||  | | |  ||| |  || |||     |||| |     ||| |  |||||
ATTGGAGGAGTGCCTATCAAAATAGGAGGAATGGCCAAAGGTTCTGGGATGATTCATCCAAATATGGCAACAATGCTTGGTgtaagttctgtatcaatctcattttccacacagtcctactcctctattgatccctttctcaaggcatgtatgagcttcattataaccctttttcttacag

upper sequence: GRMZM2G044237_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA10G05090.1 (Glycine max), 5'ss of exon 9
ATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATGATTCACCCAAATATGGCAACAATGCTTGGTgtatgttcccaccctcaggttcccccttcctctattgaggcatgtagcaaagtttgatggcc-atttttttctactacag
 ||||||||       | ||| | || || ||||||||||||||||||||||| |||||||||||||| || |||||||| |||||| |  ||     | |||   |||  |      | | |  |   | |||    |     |  | | ||||||  ||
GTTGGAGGAACTAGGGTCAGAGTTGGGGGAATGGCTAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGGgtatgt-cttacttgatgcttctttcttatttggaatatgtagatttaacagtccattccttgaactgtatctactctag

upper sequence: GRMZM2G044237_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA13G19450.2 (Glycine max), 5'ss of exon 10
ATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATGATTCACCCAAATATGGCAACAATGCTTGGTgtatgttcccaccctcaggttcccccttcctctattgaggcatgtagcaaagtttgatggcc-atttttttctactacag
|||||||||       | ||| | || || ||||| ||||||||||||||||| |||||||||||||| || |||||||| |||||||   ||     | |||   |||  |      |   |  |   |  ||  | |     | |||| ||||||  ||
ATTGGAGGAACTAAGGTCAGAGTTGGGGGAATGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGGgtatgtttt-acttgatgcttctttcttatttggaatatatagatttaactgtccgttccttgaattttatctactgtag

upper sequence: GRMZM2G044237_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv08s0040g03320.t01 (Vitis vinifera), 5'ss of exon 10
ATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATGATTCACCCAAATATGGCAACAATGCTTGGTgtatgttcccaccctc-aggttcccccttcctctattgaggcatg--tagcaaagtttgatggccatttttttctactacag
 |||||||      ||||||| | || || ||||| || |||||||| ||||| || ||||||||||| || |||||||||||  ||  |     || |  |  ||  |||  | |   |   ||   ||    | |||  ||       |  | |  | |||
GTTGGAGGGACAAATATTAGAGTTGGGGGAATGGCAAAGGGTTCTGGGATGATCCATCCAAATATGGCTACCATGCTTGGTgtgcgtctctgttttctacatgtcctgttctgcaaagtaaatattcttattccactttcttgataggactactttgttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76917242|gb|DV166726.1|DV166726
EST:     TGGCTAAAGGTTCTGGAATGATTCACCCAAATATGGCAACAATGCTTGGT                         GTTTTGACCACAGATGCTCAAGTCAGCAGTGATGTCTGGAGAGAAATGATC
genomic: TGGCTAAAGGTTCTGGAATGATTCACCCAAATATGGCAACAATGCTTGGTgtatgttccc ... tctactacagGTTTTGACCACAGATGCTCAAGTCAGCAGTGATGTCTGGAGAGAAATGATC