1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AAGTAGGGTTGGTTGTTGATTGTGAATGGGCAGAGCCATTTTCTGAAAATGTGGAAGACCAAATTGCTGCACAGCGGAGGCTTGACTTTCAACTTGGATGgtatgttgctattcatattactaatatcacatgggcatgtcttccaacattgtttagcttttagactagtttttccccttaaaaaaggcatagattcctc...
species | Zea mays |
transcript | GRMZM2G044092_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTGGAAGACCAAATTGCTGCACAGCGGAGGCTTGACTTTCAACTTGGATG GTACCTAGATCCAATATATTTTGGTGATTACCCAGAAAGCATGCGTCAGCGEST: gi|67011065|gb|CO439814.1|CO439814
genomic: GTGGAAGACCAAATTGCTGCACAGCGGAGGCTTGACTTTCAACTTGGATGgtatgttgct ... ttacttaaagGTACCTAGATCCAATATATTTTGGTGATTACCCAGAAAGCATGCGTCAGCG
EST: GTGGAAGACCAAATTGCTGCACAGCGGAGGCTTGACTTTCAACTTGGATG GTACCTAGATCCAATATATTTTGGTGATTACCCAGAAAGCATGCGTCAACGEST: gi|71772492|gb|DR970424.1|DR970424
genomic: GTGGAAGACCAAATTGCTGCACAGCGGAGGCTTGACTTTCAACTTGGATGgtatgttgct ... ttacttaaagGTACCTAGATCCAATATATTTTGGTGATTACCCAGAAAGCATGCGTCAGCG
EST: TGGAAGAC-AAATTGCTGCACAGCGGAGGCTTGACTTTTCA-CTTGGATG GTACCTAGATTCAATATATTTTTGGTGATTACCCAGAAAGCATGCGTCAGC
genomic: TGGAAGACCAAATTGCTGCACAGCGGAGGCTTGACTTT-CAACTTGGATGgtatgttgct ... ttacttaaagGTACCTAGATCCAATATATTTT-GGTGATTACCCAGAAAGCATGCGTCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTAGGGTTGGTTGTTGATTGTGAATGGGCAGAGCCATTTTCTGAAAATGTGGAAGACCAAATTGCTGCACAGCGGAGGCTTGACTTTCAACTTGGATGgtatgttgctattcatattactaatatcacatgggcatgtcttccaacattgtttagcttttagactagtttttccccttaaaaaaggcatagattcctc
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaag