1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTTCCCTTGCGTCTGATTTCATGTATAACCATATGTCAAGAGACGTAACTTCCAGCTTTGGTTACGATTACTTGCTTAGGCAGgtcagtgtttttagacgttttacattttagatagcattgcatcagctattgagctccaagtaatgtatctcttcaccatttttatctgtataaatgaatattcttctggaaatgaattctgttgcag
species | Zea mays |
transcript | GRMZM2G043983_T03 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGTCAAGAGACGTAACTTCCAGCTTTGGTTACGATTACTTGCTTAGGCAG TGCCGTCTAAGAGGCAAAATTGACTCGAATGGTGTTGTTGCGGCATATCTGEST: gi|149065576|gb|EE286698.2|EE286698
genomic: TGTCAAGAGACGTAACTTCCAGCTTTGGTTACGATTACTTGCTTAGGCAGgtcagtgttt ... tctgttgcagTGCCGTCTAAGAGGCAAAATTGACTCGAATGGTGTTGTTGCGGCATATCTG
EST: TGTCAAGAGACGTAACTTCCAGCTTTGGTTACGATTACTTGCTTAGGCAG TGCCGTTTAAGAGGCAAAATTGACTCGAATGGTGTTGTTGCGGCATATCTGEST: gi|6012583|gb|AW062020.1|AW062020
genomic: TGTCAAGAGACGTAACTTCCAGCTTTGGTTACGATTACTTGCTTAGGCAGgtcagtgttt ... tctgttgcagTGCCGTCTAAGAGGCAAAATTGACTCGAATGGTGTTGTTGCGGCATATCTG
EST: TGTCAAGAGACGTAACTTCCAGCTTTGGTTACGATTACTTGCTTAGGCAG TGCCGTTTAAGAGGCAAAATTGACTCGAATGGTGTTGTTGCGGCATATCTGEST: gi|76280767|gb|DV020335.1|DV020335
genomic: TGTCAAGAGACGTAACTTCCAGCTTTGGTTACGATTACTTGCTTAGGCAGgtcagtgttt ... tctgttgcagTGCCGTCTAAGAGGCAAAATTGACTCGAATGGTGTTGTTGCGGCATATCTG
EST: TGTCAAGAGACGTAACTTCCAGCTTTGGTTACGATTACTTGCTTAGGCAG TGCCGTCTAAGAGGCAAAATTGACTCGAATGGTGTTGTTGCGGCATATCTGEST: gi|113702734|gb|EE680238.1|EE680238
genomic: TGTCAAGAGACGTAACTTCCAGCTTTGGTTACGATTACTTGCTTAGGCAGgtcagtgttt ... tctgttgcagTGCCGTCTAAGAGGCAAAATTGACTCGAATGGTGTTGTTGCGGCATATCTG
EST: TGTCAAGAGACGTAACTTCCAGCTTTGGTTACGATTACTTGCTTAGGCAG TGCCGTCTAAGAGGCAAAATTGACTCGAATGGTGTTGTTGCGGCATATCTGEST: gi|32867645|gb|CF007327.1|CF007327
genomic: TGTCAAGAGACGTAACTTCCAGCTTTGGTTACGATTACTTGCTTAGGCAGgtcagtgttt ... tctgttgcagTGCCGTCTAAGAGGCAAAATTGACTCGAATGGTGTTGTTGCGGCATATCTG
EST: TGTCAAGAGACGTAACTTCCAGCTTTGGTTACGATTACTTGCTTAGGCAG TGCCGTCTAAGAGGCAAAATTGACTCGAATGGTGTTGTTGCGGCATATCTGEST: gi|78025625|gb|DV494012.1|DV494012
genomic: TGTCAAGAGACGTAACTTCCAGCTTTGGTTACGATTACTTGCTTAGGCAGgtcagtgttt ... tctgttgcagTGCCGTCTAAGAGGCAAAATTGACTCGAATGGTGTTGTTGCGGCATATCTG
EST: TGTCAAGAGACGTAACTTCCAGCTTTGGTTACGATTACTTGCTTAGGCAG TGCCGTCTAAGAGGCAAAATTGACTCGAATGGTGTTGTTGCGGCATATCTGEST: gi|76016907|gb|DT944077.1|DT944077
genomic: TGTCAAGAGACGTAACTTCCAGCTTTGGTTACGATTACTTGCTTAGGCAGgtcagtgttt ... tctgttgcagTGCCGTCTAAGAGGCAAAATTGACTCGAATGGTGTTGTTGCGGCATATCTG
EST: TGTCAAGAGACGTAACTTCCAGCTTTGGTTACGATTACTTGCTTAGGCAG TGCCGTCTAAGAGGCAAAATTGACTCGAATGGTGTTGTTGCGGCATATCTG
genomic: TGTCAAGAGACGTAACTTCCAGCTTTGGTTACGATTACTTGCTTAGGCAGgtcagtgttt ... tctgttgcagTGCCGTCTAAGAGGCAAAATTGACTCGAATGGTGTTGTTGCGGCATATCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTCCCTTGCGTCTGATTTCATGTATAACCATATGTCAAGAGACGTAACTTCCAGCTTTGGTTACGATTACTTGCTTAGGCAGgtcagtgtttttagacgttttacattttagatagcattgcatcagctattgagctccaagtaatgtatctcttcaccatttttatctgtataaatgaatattcttctggaaatgaattctgttgcag
- - - - - - - - - - - - - - - - - - - AAGAGA