1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAATGTCATCGAGAAGTGCTTAGTCTTTGGAAATCCTGTAGAACGTCAGGTTCTGATTGGTGAGATGCTTGGATCCACTAGCGAAAGCGAACCTCTTGAGgtatggtgatgtttgaaacttttctttatcttctttgaagtagtttttatttaagcacaagtgaccgaatgctttgttcaccacttagtactgacatgggtttgcattgtctgttgcgatag
species | Zea mays |
transcript | GRMZM2G042623_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTCTGATTGGTGAGATGCTTGGATCCACTAGCGAAAGCGAACCTCTTGAG GTAATGATGAAAGACCAGTTTGGAAACTATGTGGTGCAGAAGGTGTTAGAAEST: gi|32935053|gb|CF039865.1|CF039865
genomic: TTCTGATTGGTGAGATGCTTGGATCCACTAGCGAAAGCGAACCTCTTGAGgtatggtgat ... gttgcgatagGTAATGATGAAAGACCAGTTTGGAAACTATGTGGTGCAGAAGGTGTTAGAA
EST: TTCTGATTGGTGAGATGCTTGGATCCACTAGCGAAAGCGAACCTCTTGAG GTAATGATGAAAGACCAGTTTGGAAACTATGTGGTGCGGAAGGTGTTAGAAEST: gi|5296192|gb|AI782872.1|AI782872
genomic: TTCTGATTGGTGAGATGCTTGGATCCACTAGCGAAAGCGAACCTCTTGAGgtatggtgat ... gttgcgatagGTAATGATGAAAGACCAGTTTGGAAACTATGTGGTGCAGAAGGTGTTAGAA
EST: TTCTGATTGGTGAGATGCTTGGATCCACTAGCGAAAGCGAACCTCTTGAG GTAATGATGAAAGACCAGTTTGGAAACTATGTGGTGCAGAAGGTGTTAGAAEST: gi|32789374|gb|CD941610.1|CD941610
genomic: TTCTGATTGGTGAGATGCTTGGATCCACTAGCGAAAGCGAACCTCTTGAGgtatggtgat ... gttgcgatagGTAATGATGAAAGACCAGTTTGGAAACTATGTGGTGCAGAAGGTGTTAGAA
EST: GATCCACTAGCGAAAGCGAACCTCTTGAG GTAATGATGAAAGACCAGTTTGGAAACTATGTGGTGCAGAAGGTGTTAGAA
genomic: GATCCACTAGCGAAAGCGAACCTCTTGAGgtatggtgat ... gttgcgatagGTAATGATGAAAGACCAGTTTGGAAACTATGTGGTGCAGAAGGTGTTAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGTCATCGAGAAGTGCTTAGTCTTTGGAAATCCTGTAGAACGTCAGGTTCTGATTGGTGAGATGCTTGGATCCACTAGCGAAAGCGAACCTCTTGAGgtatggtgatgtttgaaacttttctttatcttctttgaagtagtttttatttaagcacaagtgaccgaatgctttgttcaccacttagtactgacatgggtttgcattgtctgttgcgatag
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