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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCTGGTATAGTAACTGTTCCATTTGTTTCTTTTGATAATGGTGTAGAAATTCCCTGCATCCAGACCGTTTGGTATCAAGTACAAGTTTCACTTAGAGgtaagtgggacttgtttttcgttaatatatgccttgtatttcgtttaaaggatcgttgatcttgtcactaatttttaatagtcttttggatttaaatatc...

Basic information

species Zea mays
transcript GRMZM2G042398_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G042398_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os08g08200.2 (Oryza sativa), 5'ss of exon 9
TTTTCTGGTATAGTAACTGTTCCATTTGTTTCTTTTGATAATGGTGTAGAAATTCCCTGCATCCAGACCGTTTGGTATCAAGTACAAGTTTCACTTAGAGgtaagtggg-acttgtttttcgttaatatatgcctt--gtat-ttcgtttaaaggatcgttgatcttgtcactaatttttaatagtcttttggatttaaatatc
                                                 |||||||| ||||||||||| || |||||||| ||||||||||||||||||||||| |   |||  |  || || |  || |  |||  || | |   | || ||| |  || |||||  ||||  ||| |  ||||   ||  |||  | ||  
-------------------------------------------------AAATTCCCCGCATCCAGACCTTTCGGTATCAAATACAAGTTTCACTTAGAGgtaagggattactcataatttgtaatcatgttgctttagtgtgtgtttctatagggtgatttatcttagcacttgtttct--tagttgctttaatt-gagtac-

upper sequence: GRMZM2G042398_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv19s0014g04740.t01 (Vitis vinifera), 5'ss of exon 9
TTTTCTGGTATAGTAACTGTTCCATTTGTTTCTTTTGATAATGGTGTAGAAATTCCCTGCATCCAGACCGTTTGGTATCAAGTACAAGTTTCACTTAGAGgtaagtgggacttgtttttcgttaatatatg-ccttgtatttcgtttaaaggatcgttgatcttgtcactaattttta-atagtcttttgg-atttaaatatc
                                                 |||||     | || || || |||||||||||||||||||| ||| |||||||||       ||    ||| ||| ||||   |||| |  |   |||    | | | |  | ||   ||| | |  |    | | | ||    |||| ||   
-------------------------------------------------AAATTTAAAACTTCTAGTCCCTTTGGTATCAAGTACAAGTTCCACCTAGAGgtaatgttctattaaacttctttattataaatccttttgctaattttggttggttggtatttttcagactgaatgatgtgcactatgttaatgtttagat---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166478805|gb|EG300577.1|EG300577
EST:     ATTCCCTGCATCCAGACCGTTTGGTATCAAGTACAAGTTTCAACTTAGAG                         GATGCTGTTGATTGCCCAGAATGGGTTGTTCCATTCCATCTCTTCAAATT
genomic: ATTCCCTGCATCCAGACCGTTTGGTATCAAGTACAAGTTTC-ACTTAGAGgtaagtggga ... caacatgcagGATGCTGTTGATTGCCCAGAATGGGTTGTTCCATTCCATCTCTTCAAATT
EST: gi|26558555|gb|CA830790.1|CA830790
EST:     AATTCCCTGCATCCAGACCGTTTGGTATCAAGTACAAGTTTCACTTAGAG                         GATGCTGTTGATTGCCCAGAATGGGTTGTTCCATTCCATCTCTTCAAATTA
genomic: AATTCCCTGCATCCAGACCGTTTGGTATCAAGTACAAGTTTCACTTAGAGgtaagtggga ... caacatgcagGATGCTGTTGATTGCCCAGAATGGGTTGTTCCATTCCATCTCTTCAAATTA
EST: gi|18165055|gb|BM334900.1|BM334900
EST:     CTGCATCCAGACCGTTTGGTATCAAGTACAAGTTTCACTTAGAG                         GATGCTGTTGATTGCCCAGAATGGGTTGTTCCATTCCATCTCTTCAAATTA
genomic: CTGCATCCAGACCGTTTGGTATCAAGTACAAGTTTCACTTAGAGgtaagtggga ... caacatgcagGATGCTGTTGATTGCCCAGAATGGGTTGTTCCATTCCATCTCTTCAAATTA
EST: gi|22472517|gb|BU036997.1|BU036997
EST:     AATTCCCTGCATCCAGACCGTTTGGTATCAAGTACAAGTTTCACTTAGAG                         GATGCTGTTGATTGCCCAGAATGGGTTGTTCCATTCCATCTCTTCAAATTA
genomic: AATTCCCTGCATCCAGACCGTTTGGTATCAAGTACAAGTTTCACTTAGAGgtaagtggga ... caacatgcagGATGCTGTTGATTGCCCAGAATGGGTTGTTCCATTCCATCTCTTCAAATTA
EST: gi|211475864|gb|FL467329.1|FL467329
EST:     AATTCCCTGCATCCAGACCGTTTGGTATCAAGTACAAGTTTCACTTAGAG                         GATGCTGTTGATTGCCCAGAATGGGTTGTTCCATTCCATCTCTTCAAATTA
genomic: AATTCCCTGCATCCAGACCGTTTGGTATCAAGTACAAGTTTCACTTAGAGgtaagtggga ... caacatgcagGATGCTGTTGATTGCCCAGAATGGGTTGTTCCATTCCATCTCTTCAAATTA
EST: gi|87155667|gb|DY400456.1|DY400456
EST:     AATTCCCTGCATCCAGACCGTTTGGTATCAAGTACAAGTTTCACTTAGAG                         GATGCTGTTGATTGCCCAGAATGGGTTGTTCCATTCCATCTCTTCAAATTA
genomic: AATTCCCTGCATCCAGACCGTTTGGTATCAAGTACAAGTTTCACTTAGAGgtaagtggga ... caacatgcagGATGCTGTTGATTGCCCAGAATGGGTTGTTCCATTCCATCTCTTCAAATTA
EST: gi|18164178|gb|BM334017.1|BM334017
EST:     AATTCCCTGCATCCAGACCGTTTGGTATCAAGTACAAGTTTCACTTAGAG                         GATGCTGTTGATTGCCCAGAATGGGTTGTTCCATTCCATCTCTTCAAATTA
genomic: AATTCCCTGCATCCAGACCGTTTGGTATCAAGTACAAGTTTCACTTAGAGgtaagtggga ... caacatgcagGATGCTGTTGATTGCCCAGAATGGGTTGTTCCATTCCATCTCTTCAAATTA