1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGGGTTCATTCGACGGATGGTCACAGGGCGAGGCGATGTCCATGGAGTATTCAGGTGACTACGGAAGATTCTCTGCAACTCTGAAGCTAAGACCTGGAAGgttagtttttaccagttttcccatgctggccagcttgtttccttcacgtaaataaactcgctgtgtggccccctatggaag
species | Zea mays |
transcript | GRMZM2G042245_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAGGTGACTACGGAAGATTCTCTGCGACTCTGAAAGCTA-GACCTGGAAG GTACGAGATCAAGTTTTTGGTTGATGGGGGGAATGGAGATEST: gi|89251127|gb|DY622913.1|DY622913
genomic: CAGGTGACTACGGAAGATTCTCTGCAACTCTGAA-GCTAAGACCTGGAAGgttagttttt ... cctatggaagGTACGAGATCAAGTTTTTGGTTGATGGGG--AATGGAGAT
EST: TCAGGTGACTACGGAAGATTTTCTGCAACTCTGAAGCTAAGACCTGGAAG GTACGAGATCAAGTTTTTGGTTGATGGGGAATGGAGATTGTCGCCTGAATAEST: gi|32852396|gb|CD992077.1|CD992077
genomic: TCAGGTGACTACGGAAGATTCTCTGCAACTCTGAAGCTAAGACCTGGAAGgttagttttt ... cctatggaagGTACGAGATCAAGTTTTTGGTTGATGGGGAATGGAGATTGTCGCCTGAATA
EST: TCAGGTGACTACGGAAGATTCTCTGCGACTCTGAAGCTAAGACCTGGAAG GTACGAGATCAAGTTTTTGGTTGATGGGGAATGGAGATTGTCGCCTGAATAEST: gi|113686488|gb|DW841257.1|DW841257
genomic: TCAGGTGACTACGGAAGATTCTCTGCAACTCTGAAGCTAAGACCTGGAAGgttagttttt ... cctatggaagGTACGAGATCAAGTTTTTGGTTGATGGGGAATGGAGATTGTCGCCTGAATA
EST: TCAGGTGACTACGGAAGATTCTCTGCAACTCTGAAGCTAAGACCTGGAAG GTACGAGATCAAGTTTTTGGT-GATGGGGAAEST: gi|78081937|gb|DV510349.1|DV510349
genomic: TCAGGTGACTACGGAAGATTCTCTGCAACTCTGAAGCTAAGACCTGGAAGgttagttttt ... cctatggaagGTACGAGATCAAGTTTTTGGTTGATGGGGAA
EST: TCAGGTGACTACGGAAGATTCTCTGCAACTCTGAAGCTAAGACCTGGAAG GTACGAGATCAAGTTTTTGGTTGATGGGGAATGGAGATTGTCGCCTGAATAEST: gi|16925338|gb|BM078406.1|BM078406
genomic: TCAGGTGACTACGGAAGATTCTCTGCAACTCTGAAGCTAAGACCTGGAAGgttagttttt ... cctatggaagGTACGAGATCAAGTTTTTGGTTGATGGGGAATGGAGATTGTCGCCTGAATA
EST: TCAGGTGACTACGGAAGATTCTCTGCAACTCTGAAGCTAAGACCTGGAAG GTACGAGATCAAGTTTTTGGTTGATGGGGAATGGAGATTGTCGCCTGAATAEST: gi|76018422|gb|DT945592.1|DT945592
genomic: TCAGGTGACTACGGAAGATTCTCTGCAACTCTGAAGCTAAGACCTGGAAGgttagttttt ... cctatggaagGTACGAGATCAAGTTTTTGGTTGATGGGGAATGGAGATTGTCGCCTGAATA
EST: TCAGGTGACTACGGAAGATTCTCTGCAACTCTGAAGCTAAGACCTGGAAG GTACGAGATCAAGTTTTTGGTTGATGGGGAATGGAGATTGTCGCCTGAATAEST: gi|71428924|gb|DR809974.1|DR809974
genomic: TCAGGTGACTACGGAAGATTCTCTGCAACTCTGAAGCTAAGACCTGGAAGgttagttttt ... cctatggaagGTACGAGATCAAGTTTTTGGTTGATGGGGAATGGAGATTGTCGCCTGAATA
EST: TCAGGTGACTACGGAAGATTTTCTGCAACTCTGAAGCTAAGACCTGGAAG GTACGAGATCAAGTTTTTGGTTGATGGGGAATGGAGATTGTCGCCTGAATAEST: gi|6563962|gb|AW231584.1|AW231584
genomic: TCAGGTGACTACGGAAGATTCTCTGCAACTCTGAAGCTAAGACCTGGAAGgttagttttt ... cctatggaagGTACGAGATCAAGTTTTTGGTTGATGGGGAATGGAGATTGTCGCCTGAATA
EST: TCAGGTGACTACGGAAGATTCTCTGCGACTCTGAAGCTAAGACCTGGAAG GTACGAGATCAAGTTTTTGGTTGATGGGGAATGGAGATTGTCGCCTGAATA
genomic: TCAGGTGACTACGGAAGATTCTCTGCAACTCTGAAGCTAAGACCTGGAAGgttagttttt ... cctatggaagGTACGAGATCAAGTTTTTGGTTGATGGGGAATGGAGATTGTCGCCTGAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGTTCATTCGACGGATGGTCACAGGGCGAGGCGATGTCCATGGAGTATTCAGGTGACTACGGAAGATTCTCTGCAACTCTGAAGCTAAGACCTGGAAGgttagtttttaccagttttcccatgctggccagcttgtttccttcacgtaaataaactcgctgtgtggccccctatggaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG