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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATCGAAAGAATTTAAGGAGTCAAAGGGTCTCATTCTTGTTAGCTCTGATGTATCTGCCAGGGGTGTTGATTATCCCAATGTCACACTAGTTGTGCAGgtaaacacctcttgtacagatttctggccatgtttattctacagatggttccagttttgggggtttcatactttcatttgctctttatggtaaaacgaga...

Basic information

species Zea mays
transcript GRMZM2G041732_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G041732_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os06g33520.1 (Oryza sativa), 5'ss of exon 8
GATATCGAAAGAATTTAAGGAGTCAAAGGGTCTCATTCTTGTTAGCTCTGATGTATCTGCCAGGGGTGTTGATTATCCCAATGTCACACTAGTTGTGCAGgtaaacacctcttgtacag-atttctggccatgtttattctacagatggttccagttttgggggtttcatactttcatttgctctttatggtaaaacgaga-
 ||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| || |||||||  | ||  | ||  | | || | |   |||||||| |   | ||  |    | || |   ||| |||     || || |    |    | | ||    
AATATCCAAAGAATTTAAGGAATCAAAAGGTCTTATTCTTGTTAGCTCCGATGTATCTGCTAGGGGCGTTGATTATCCCAATGTCACACTAGTCGTCCAGgtaacgaacttctttatggtagttattgagctgtttatt-tgttgttgcctatcttctttgctatttgatatacaaatatg-taaaaactccagatcgtcca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60343002|gb|DN209975.1|DN209975
EST:     GCCAGGGGTGTTGATTATCCCAATGTCACACTAGTTGTGCAG                         TTGGGGGTGCCAACTGACAGAGAGCAATATATTCATCGACTTGGTAGAACT
genomic: GCCAGGGGTGTTGATTATCCCAATGTCACACTAGTTGTGCAGgtaaacacct ... attatcacagTTGGGGGTGCCAACTGACAGAGAGCAATATATTCATCGACTTGGTAGAACT
EST: gi|211278717|gb|FL386602.1|FL386602
EST:     ATGTATCTGCCAGGGGTGTTGATTATCCCCATGTCACACTAGTTGTGCAG                         TTGTGGGTGCCCACTGACAAAAAGCAATATATTCTTCCACTGGGTAGAACT
genomic: ATGTATCTGCCAGGGGTGTTGATTATCCCAATGTCACACTAGTTGTGCAGgtaaacacct ... attatcacagTTGGGGGTGCCAACTGACAGAGAGCAATATATTCATCGACTTGGTAGAACT
EST: gi|32930345|gb|CF035157.1|CF035157
EST:     ATGTATCTGCCAGGGGTGTTGATTATCCCAATGTCACACTAGTTGTGCAG                         TTGGGGGTGCCAACTGACAGAGAGCAATATATTCATCGACTTGGTAGAACT
genomic: ATGTATCTGCCAGGGGTGTTGATTATCCCAATGTCACACTAGTTGTGCAGgtaaacacct ... attatcacagTTGGGGGTGCCAACTGACAGAGAGCAATATATTCATCGACTTGGTAGAACT
EST: gi|60399435|gb|DN232247.1|DN232247
EST:     TAGTTGTGCAG                         TTGGGGGTGCCAACTGACAGAGAGCAATATATTCATCGACTTGGTAGAACT
genomic: TAGTTGTGCAGgtaaacacct ... attatcacagTTGGGGGTGCCAACTGACAGAGAGCAATATATTCATCGACTTGGTAGAACT