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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTAAATCAAATGCGATCTGAGGATGGGGATCCAGAAAAGCTCCTCCGGCATTCATTTTATCAATTTCAGGCTGACCGTTCTCTTCCTGATCTTGAGgtctgctgacttcacttttctttgaaatggagaagtttatttatgctcctgcctcctaagtgtttttgtggtcatcctacatacataatgcctctatcct...

Basic information

species Zea mays
transcript GRMZM2G040995_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G040995_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os12g18140.1 (Oryza sativa), 5'ss of exon 8
GCTGTTAAATCAAATGCGATCTGAGGATGGGGATCCAGAAAAGCTCCTCCGGCATTCATTTTATCAATTTCAGGCTGACCGTTCTCTTCCTGATCTTGAGgtctgctgacttcacttttctttgaaatggagaagtttatttatgctcctgcctcctaagtgtttttgtggtcatcctacatacataatgcctctatcct-
| ||||||||||||| || | ||| ||||| ||||| |||||||| || ||||| |||||||| |||||||| ||||| ||   ||| |||||||||||||| || |||| |      | | |      |   ||||| |              | | ||    ||  |   |   ||||||   || |   ||  |    
GTTGTTAAATCAAATACGCTGTGAAGATGGTGATCCTGAAAAGCTTCTTCGGCACTCATTTTACCAATTTCAAGCTGATCGAGTTCTCCCTGATCTTGAGgtttgttgacattgtcaatttatatttatgcttagtttttgggcttgaggattccatgagcaaattactaaacgatctacatgtttagtat-tcagtaaag

upper sequence: GRMZM2G040995_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv06s0009g01750.t01 (Vitis vinifera), 5'ss of exon 8
GCTGTTAAATCAAATGCGATCTGAGGATGGGGATCCAGAAAAGCTCCTCCGGCATTCATTTTATCAATTTCAGGCTGACCGTTCTCTTCCTGATCTTGAGgtctgctgacttcacttttctttgaaatggagaagtttatttatgctcctgcctcctaagtgtttttgtggtcatcctacatacataatgcctctatcct
|||  | ||||||||||||||||||||||| ||||| |||||| | || ||  ||||||| ||||||||||| || |||||| |  ||||||||||||||||  | ||||   |  ||| |     ||  |    |     |   | ||| | ||| || | | | | || | |   | || ||| |             
GCTTCTGAATCAAATGCGATCTGAGGATGGTGATCCTGAAAAGTTGCTTCGCAATTCATTCTATCAATTTCAAGCAGACCGTGCCATTCCTGATCTTGAGgttggttgacagtaactttgtcc---ataaattgttccccctgaccccctccttccaaattatgtatttgttgacattgcacacacag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211040728|gb|FL448007.1|FL448007
EST:     GGCATTCATTTTATCAATTTCAGGCTGACCGTTCTCTTCCTGATCTTGAG                         AAGCAAATCAAGGAACTGGAATCAGAGAGAAATTCCATGGTAATTGAGGAA
genomic: GGCATTCATTTTATCAATTTCAGGCTGACCGTTCTCTTCCTGATCTTGAGgtctgctgac ... ttttgtgcagAAGCAAATCAAGGAACTGGAATCAGAGAGAAATTCCATGGTAATTGAGGAA