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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAGACTTTTGCTCAATTTGGTGTAGTGTTTCTTCTTTTTGCTCTTGGTCTCGAGTTTTCACTGACTAAGgtactaaaaaattttggatgttgtcgagttcaatatatctctttccaaaataattgtgacatgtgtacacgtcaaaaggtttgcttactgtccctgtcatttctatcag

Basic information

species Zea mays
transcript GRMZM2G040158_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G040158_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA16G32820.1 (Glycine max), 5'ss of exon 6
GTGGAGACTTTTGCTCAATTTGGTGTAGTGTTTCTTCTTTTTGCTCTTGGTCTCGAGTTTTCACTGACTAAGgtactaaaaaattttggatgttgtcgagttcaatatatctctttccaaaataattgtgacatgtg-tacacgtcaaaaggtttgcttactgtccctgtcatttctatcag
|| || ||| |||| ||||||||||||||||||||||| |||||| | || || |||||||| ||| | |||||         || |  |||   |  |    ||  | ||| ||||    ||  |  ||  |   | || |    |      |  |  ||  |   |     || ||    
GTTGAAACTGTTGCACAATTTGGTGTAGTGTTTCTTCTCTTTGCTTTGGGGCTGGAGTTTTCCCTGGCAAAGgttt------gttattcatgccttgcaaa--aacttctctgtttcacctattttcatgctacaagctagattctagctaaatcccaaaccatattttaagattgtaag--

upper sequence: GRMZM2G040158_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA09G27940.1 (Glycine max), 5'ss of exon 9
GTGGAGACTTTTGCTCAATTTGGTGTAGTGTTTCTTCTTTTTGCTCTTGGTCTCGAGTTTTCACTGACTAAGgtactaaaaaattttggatgttgtcgagttcaatatatctctttccaaaataattgtgacatgtgtacacgtcaaaa-ggtttgcttactgtccctgtcatttctatcag
|| |||||| |||| ||||||||||||||||||||||| |||||| | || || |||||||| ||| | |||||     |    ||    | ||||  |    ||| | ||| ||||    ||  |  ||  |   |      || |      | ||  ||  |   |     || ||    
GTTGAGACTGTTGCACAATTTGGTGTAGTGTTTCTTCTCTTTGCTTTGGGGCTGGAGTTTTCCCTGGCAAAGgtttgtta----ttcatgtcttgtaaa----aatttctctgtttcacctattttcatgctacaagcttgattctagctaaatcgcaaaccatattttaagattgtaag--