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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCGAACTTAAACGAGATGACATAAGAAATGCACGCCTGGTAGCAAATCCAGGGTGTTATCCCACATCTATTCAACTTCCGCTCGTTCCTTTGGTAAAGgtgaggtttaatagaagtttctggcatcttacacatatctatgttaatatttgcagatctggataaaattatcctaagttatgccatagaattgatttgg...

Basic information

species Zea mays
transcript GRMZM2G038848_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038848_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os10g35170.1 (Oryza sativa), 5'ss of exon 8
GACCGAACTTAAACGAGATGACATAAGAAATGCACGCCTGGTAGCAAATCCAGGGTGTTATCCCACATCTATTCAACTTCCGCTCGTTCCTTTGGTAAAGgtga-------ggtttaatagaagtttctggcatcttacacatatctatgttaatatttgcagatctggataaaattatcctaagttatgccatagaattgatttgg
 || ||| ||   |||||||| |||||||||||||| || || ||||||||||| |||||||||||||||||||| ||||| || |||||| || |||||||||        | |||| |||||||  | |     ||    | |||   ||   ||      | |   ||| ||| |   | |||      | | || | |     
AACTGAAGTTCTTCGAGATGAAATAAGAAATGCACGACTTGTTGCAAATCCAGGATGTTATCCCACATCTATTCAGCTTCCTCTTGTTCCTCTGATAAAGgtgatgagggaagattaacagaagttattagtcatatatggttctctgatttctaatgaaaccaacaaaatataatcacattgagtg----tacaaaactaacc---

upper sequence: GRMZM2G038848_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g42110.1 (Oryza sativa), 5'ss of exon 8
GACCGAACTTAAACGAGATGACATAAGAAATGCACGCCTGGTAGCAAATCCAGGGTGTTATCCCACATCTATTCAACTTCCGCTCGTTCCTTTGGTAAAGgtgaggt-----ttaatagaagtttctggc-------atct-tacacatatctatgttaata--tttgcagatctggataaaattatcctaagttatgccatagaattgatttgg
||| ||| ||   ||  |||| ||||| |||||||| || || |||||||| || |||||||||||||||||||||||||| || |||||| |  |||||||| ||      |||  |  ||||  | |        |||| |     ||  |   | ||||  ||  ||  ||| || | |    |||| ||||||| |               
GACTGAAGTTCTTCGCAATGAAATAAGGAATGCACGGCTTGTTGCAAATCCGGGATGTTATCCCACATCTATTCAACTTCCTCTTGTTCCTCTAATAAAGgtgggggactaattatcaatagttcttagttgtgcaaatctctgattctaattgcatcaataacttgtcaactctagaaataggagtcctcagttatgtc---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67010559|gb|CO439308.1|CO439308
EST:     CAGGGTGTTATCCCACATCTATTCAACTTCCGCTCGTTCCTTTGGTAAAG                         GCAAAACTGATCAAGCTAACCAACATTATTATTGATGCAAAATCTGGAGTC
genomic: CAGGGTGTTATCCCACATCTATTCAACTTCCGCTCGTTCCTTTGGTAAAGgtgaggttta ... tgctttgcagGCAAAACTGATCAAGCTAACCAACATTATTATTGATGCAAAATCTGGAGTC