1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAGATCCTACTCGACTTGTTGCTGTCAACATCAGCACGGATATGATCCATACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataatttcgtaccaggttttaacttattttgcaggcttggtccaataagatagtctttatgcaaaagtggcttggattagaggtagtagatctcaaa...
species | Zea mays |
transcript | GRMZM2G038588_T03 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAG CAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAGEST: gi|148960674|gb|EE011305.2|EE011305
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCCTATGTTAAGGAACCTGAAGAAATAATATTTAG CAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAGEST: gi|71763129|gb|DR961066.1|DR961066
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCTTATGTTAAGGAACCTGAAGAAATAATATCTAG CAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAGEST: gi|86471476|gb|DY237846.1|DY237846
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAG CAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAGEST: gi|78075700|gb|DV504134.1|DV504134
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAG CAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAGEST: gi|211229043|gb|FL456610.1|FL456610
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAG CAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAGEST: gi|78081105|gb|DV509517.1|DV509517
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAG CAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAGEST: gi|71323423|gb|DR798362.1|DR798362
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATTTAG CAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAGEST: gi|110518920|gb|EE023507.1|EE023507
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCCTATGTTAAGGAACCTGAAGAAATAATATCTAG CAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAGEST: gi|31405753|gb|CD484485.1|CD484485
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAG CAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAGEST: gi|50338323|gb|CO533449.1|CO533449
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAG CAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAGEST: gi|148965176|gb|EE015985.2|EE015985
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAG CAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAGEST: gi|86471665|gb|DY238035.1|DY238035
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCCTATGTTAAGGAACCTGAAGAAATAATATCTAG CAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAGEST: gi|149010086|gb|EE041893.2|EE041893
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAG CAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAGEST: gi|50338769|gb|CO533895.1|CO533895
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAG CAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAGEST: gi|116827681|gb|EC871609.1|EC871609
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAG CAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAGEST: gi|149073620|gb|EE161922.2|EE161922
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATTTAG CAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAGEST: gi|149034778|gb|EE155078.2|EE155078
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCCTATGTTAAGGAACCTGAAGAAATAATATCTAG CAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAGEST: gi|93014406|gb|EB639926.1|EB639926
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCTTATGTTAAGGAACCTGAAGAAATAATATCTAG CAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAGEST: gi|148999969|gb|EE037044.2|EE037044
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATTTAG CAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAGEST: gi|211013387|gb|FL466952.1|FL466952
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAG CAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAGEST: gi|60401015|gb|DN233822.1|DN233822
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAG CAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAGEST: gi|71324526|gb|DR798964.1|DR798964
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAG CAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAGEST: gi|60359327|gb|DN226300.1|DN226300
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAG CAATGTTGCCGGATTCATTCATGTTATTGATGTTGACATCCAAAGEST: gi|78122373|gb|DV540757.1|DV540757
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
EST: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATTTAG CAATGTTGCCGGATTCATTCATGTTTCTGATGTTGACATCCAAAG
genomic: ACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataattt ... tacactgcagCAATGTTGCCGGATTCATTCATGTTACTGATGTTGACATCCAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGATCCTACTCGACTTGTTGCTGTCAACATCAGCACGGATATGATCCATACAGTGCTTGCAATTTCCTATGCTAAGGAACCTGAAGAAATAATATCTAGgtaataatttcgtaccaggttttaacttattttgcaggcttggtccaataagatagtctttatgcaaaagtggcttggattagaggtagtagatctcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA